Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30535.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    96   3e-21
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    40   2e-04
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.39 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    29   0.68 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.1  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   4.8  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDXXXAVREVQE 434
           H+KC+ F+RPT   + LL  ELRDPKY  Y +YF+NV+ K+ ++ LAE D   AV+ +QE
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQE 122

Query: 435 VFADYLAVDRHLFSFNIVGCLQG--PGWNQQHLQRVSQGLL 551
            F DYL V+  L SFNI   ++     W      R  QG++
Sbjct: 123 FFLDYLVVNNDLASFNIPHIIEDSPDNWQDGAFHRTHQGII 163



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/51 (29%), Positives = 34/51 (66%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYL 213
           M+++ A + Y  ++       +K++L++++TT IVS   +QS +L++++YL
Sbjct: 1   MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYL 50


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +3

Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAE----CDXXXAVREVQE 434
           I F++PT ENI L+  +L    Y   ++ FS+ +S+A ++  AE     +    + +V +
Sbjct: 92  IYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYD 151

Query: 435 VFADYLAVDRHLFSFNI 485
            + +Y+ ++   FS  +
Sbjct: 152 QYLNYVVLESDFFSLQL 168


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 280 RIKTMHFMCSCYPIWHDCLSSRISKLPSVRFP 185
           R++ +H + SC+P  HD  S +  K P   FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -3

Query: 527 EMLLVPPRTLEASN-NIEREQVSVHSQVVSKNFLDLSDSXXXIT 399
           E+LL+PP+T + SN N++ +  +  +++  + F+++S +   +T
Sbjct: 232 EVLLLPPQTSKLSNKNLDTKSFTDVNKISQQGFVEISSNSSKVT 275


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 441 ADYLAVDRHLFSFNIVGCLQGPGWNQQHLQRVSQ 542
           A  +A+++      IVG L+ PGW+ ++++ VS+
Sbjct: 295 ARVVAIEKRAEISKIVGILRAPGWSLKNVEYVSK 328


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 527 EMLLVPPRTLEASNNIEREQVSVHSQVVSKNFLDLSDSXXXITFGQSFDVCLRNYITEIY 348
           +M   P   +E   N+  +  SV  ++++ N   +      + F  SFDV  R Y T  Y
Sbjct: 328 KMANAPKHVVEFLENLSLKNSSVLKKILN-NLALMKKKELNLNFLPSFDVWDREYYTARY 386

Query: 347 KVNTI 333
           K + I
Sbjct: 387 KQSLI 391


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 IREDRQSCQMG*HEHMKCIVFIRPTSENIALLSRELRDPKYG 338
           IR D   C     EH    +   P +E  A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,661
Number of Sequences: 5004
Number of extensions: 45522
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)