Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30535.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    75   4e-14
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    35   0.057
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165...    31   0.70 
01_05_0023 - 17258282-17258602                                         30   1.6  
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169...    29   2.1  
09_02_0249 + 6240237-6240287,6241489-6241764                           28   6.5  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 31/77 (40%), Positives = 51/77 (66%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDXXXAVREVQE 434
           H+K + F+RP+S+N+  L R L  P++  Y ++FSNV+    I+ LA+ D    V++VQE
Sbjct: 66  HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125

Query: 435 VFADYLAVDRHLFSFNI 485
            +AD+ A+D + F+ NI
Sbjct: 126 FYADFCAIDPYHFTLNI 142



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 26/57 (45%), Positives = 42/57 (73%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           M +I  ++ YI +M     PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +3

Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTLAECDXXXA-VREV 428
           M  I FI+PT ENI +   ++  + P Y   +++FS+ V +  +  + +     A +  +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531

Query: 429 QEVFADYLAVDRHLFS 476
            E+  +Y A+D   F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547


>12_01_0219 -
           1651833-1651987,1652172-1652471,1652889-1652967,
           1653047-1653111,1653236-1653288,1653666-1654084
          Length = 356

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 438 FADYLAVDRHLFSFNIVGCLQGPGWNQQHLQRVSQGLLGAPPVSAAASLRSLR 596
           F   L+V    F   I  C  G     + ++RV  G  GAPPVSA A  R +R
Sbjct: 31  FTHLLSVVSSAFISFITDCRPGLSIPTEEVRRVVAGEEGAPPVSAVAPGRLMR 83


>01_05_0023 - 17258282-17258602
          Length = 106

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 598 PRSERRLAAAXTGGAPSRP*ETRWRCCWFHPGPW 497
           P ++  ++AA  GG   +P + R    W  P PW
Sbjct: 19  PSNQHAVSAAEPGGGDQQPAQRRRERTWLPPNPW 52


>11_01_0217 -
           1698721-1698875,1699122-1699421,1699840-1699918,
           1699998-1700062,1700187-1700239,1700654-1701072
          Length = 356

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 483 IVGCLQGPGWNQQHLQRVSQGLLGAPPVSAAASLRSLR 596
           I  C  G     + ++RV  G  GAPPVSA A  R LR
Sbjct: 46  ITDCRPGLSIPTEEVRRVVAGEEGAPPVSAVAPGRLLR 83


>09_02_0249 + 6240237-6240287,6241489-6241764
          Length = 108

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
           G+ +SR N A   D+ R +T   MC+  P W
Sbjct: 42  GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,524
Number of Sequences: 37544
Number of extensions: 282788
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)