Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30534.Seq
(459 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 23 1.4
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 23 1.4
AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase ... 23 1.8
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 23 1.8
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 23 1.8
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 23 1.8
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 22 3.2
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 22 3.2
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 22 3.2
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 22 3.2
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 21 4.2
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 20 9.6
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 23.0 bits (47), Expect = 1.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 212 MGTPDIRVDTRLNKSFGLRESEMFP 286
MG P ++D++ S GL M+P
Sbjct: 142 MGIPPYQLDSKTAGSMGLTRPPMYP 166
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 23.0 bits (47), Expect = 1.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 212 MGTPDIRVDTRLNKSFGLRESEMFP 286
MG P ++D++ S GL M+P
Sbjct: 34 MGIPPYQLDSKTAGSMGLTRPPMYP 58
>AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase
protein.
Length = 268
Score = 22.6 bits (46), Expect = 1.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 76 RRQISHKRRWDPCIYS*F 129
+++I K+RW C+Y F
Sbjct: 114 KKKIRAKKRWSQCMYMYF 131
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 22.6 bits (46), Expect = 1.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 76 RRQISHKRRWDPCIYS*F 129
+++I K+RW C+Y F
Sbjct: 428 KKKIRAKKRWSQCMYMYF 445
Score = 21.4 bits (43), Expect = 4.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
++ H +WL+ LL W+
Sbjct: 212 FLSHQHAWIWLVWLLSQAWI 231
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 22.6 bits (46), Expect = 1.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 76 RRQISHKRRWDPCIYS*F 129
+++I K+RW C+Y F
Sbjct: 661 KKKIRAKKRWSQCMYMYF 678
Score = 21.4 bits (43), Expect = 4.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
++ H +WL+ LL W+
Sbjct: 445 FLSHQHAWIWLVWLLSQAWI 464
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 22.6 bits (46), Expect = 1.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 76 RRQISHKRRWDPCIYS*F 129
+++I K+RW C+Y F
Sbjct: 661 KKKIRAKKRWSQCMYMYF 678
Score = 21.4 bits (43), Expect = 4.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
++ H +WL+ LL W+
Sbjct: 445 FLSHQHAWIWLVWLLSQAWI 464
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 3.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2
Query: 92 WLICLLFHLWV 60
W+ CL+F WV
Sbjct: 131 WMWCLIFAFWV 141
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
+I H +WL+ LL W+
Sbjct: 458 FISHQHAWIWLLWLLSQTWI 477
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 3.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2
Query: 92 WLICLLFHLWV 60
W+ CL+F WV
Sbjct: 131 WMWCLIFAFWV 141
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
+I H +WL+ LL W+
Sbjct: 458 FISHQHAWIWLLWLLSQTWI 477
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.8 bits (44), Expect = 3.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2
Query: 92 WLICLLFHLWV 60
W+ CL+F WV
Sbjct: 131 WMWCLIFAFWV 141
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
+I H +WL+ LL W+
Sbjct: 458 FISHQHAWIWLLWLLSQTWI 477
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.8 bits (44), Expect = 3.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2
Query: 92 WLICLLFHLWV 60
W+ CL+F WV
Sbjct: 131 WMWCLIFAFWV 141
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 119 YIHGSHLRLWLICLLFHLWV 60
+I H +WL+ LL W+
Sbjct: 458 FISHQHAWIWLLWLLSQTWI 477
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 21.4 bits (43), Expect = 4.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 126 LTVYTRVPSSFMADLPSLSPLG 61
++ PS A LPS+SP G
Sbjct: 187 ISALVNAPSVSPASLPSISPSG 208
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 20.2 bits (40), Expect = 9.6
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = -1
Query: 102 SSFMADLPSLSPLGLAI 52
++ + +P+LSP+G+A+
Sbjct: 109 AALLRGVPTLSPVGVAL 125
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,638
Number of Sequences: 336
Number of extensions: 1934
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -