Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30534.Seq
         (459 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    27   0.24 
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    25   1.7  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    22   9.0  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           22   9.0  

>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 0.24
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 98  EDGTRVYTVNLHKRLHGVGFKKRAPRAIKEIR 193
           E G +V    + +RLH  GF  R PR +++++
Sbjct: 84  ELGLQVSAKTVSRRLHAAGFCARRPRKVRKLQ 115


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 RVYTVNLHKRLHGVGFKKRAPRAIKEI 190
           +V    + +RLH  GF  R PR ++++
Sbjct: 16  QVSAKTVSRRLHAAGFCARRPRKVRKL 42


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 334 NLHHHYVFVKASHGH 290
           N+H H +F    HGH
Sbjct: 425 NIHLHALFSAVEHGH 439


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 267 LRPKDLFKRVSTRMSGVP-ICFSANFRISLIALGARFLNP 151
           +RPKD+ KR+  +  G   + +    R  L  L    LNP
Sbjct: 511 MRPKDMRKRLMVKFKGEEGLDYGGVAREWLYLLSHEMLNP 550


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,590
Number of Sequences: 2352
Number of extensions: 9156
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39544623
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)