Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30534.Seq
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical pr... 87 4e-18
Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical pr... 64 5e-11
Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical pr... 27 5.0
U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defecti... 27 8.7
U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defecti... 27 8.7
U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defecti... 27 8.7
U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defecti... 27 8.7
AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome at... 27 8.7
>Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical
protein W09C5.6a protein.
Length = 122
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +2
Query: 62 PKGEREGKSAINEDGTRVYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDT 241
PK E++ +S INE TR YT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT
Sbjct: 3 PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62
Query: 242 RLNK 253
+LNK
Sbjct: 63 KLNK 66
Score = 64.1 bits (149), Expect = 5e-11
Identities = 27/59 (45%), Positives = 37/59 (62%)
Frame = +1
Query: 244 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 420
L + +WSKG++NVP+ N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 64 LNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122
>Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical
protein W09C5.6b protein.
Length = 70
Score = 64.1 bits (149), Expect = 5e-11
Identities = 27/59 (45%), Positives = 37/59 (62%)
Frame = +1
Query: 244 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 420
L + +WSKG++NVP+ N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 12 LNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70
>Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 27.5 bits (58), Expect = 5.0
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 35 TKLKITMAKPKG-EREGKSAINEDG-TRVYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEK 208
TKL T K EREGKS + +D T+ + + K LH KR I++ R A++
Sbjct: 100 TKLTQTFVWGKKLEREGKSGLTQDEITKQTSQRIRKNLHEAAEFKR----IRDSRAAAKE 155
Query: 209 QMGTPDIRVDTRLNKSFGLRESE 277
M D R + +E E
Sbjct: 156 DMEMMKRDADLRAGQISDTKERE 178
>Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 27.5 bits (58), Expect = 5.0
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 35 TKLKITMAKPKG-EREGKSAINEDG-TRVYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEK 208
TKL T K EREGKS + +D T+ + + K LH KR I++ R A++
Sbjct: 100 TKLTQTFVWGKKLEREGKSGLTQDEITKQTSQRIRKNLHEAAEFKR----IRDSRAAAKE 155
Query: 209 QMGTPDIRVDTRLNKSFGLRESE 277
M D R + +E E
Sbjct: 156 DMEMMKRDADLRAGQISDTKERE 178
>U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform d protein.
Length = 733
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 120 VYTRVPSSFMADLPSLSPLGLAIVILSFV 34
++ R+ + +DLP++ LG+A+V L+ +
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHI 165
>U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform a protein.
Length = 736
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 120 VYTRVPSSFMADLPSLSPLGLAIVILSFV 34
++ R+ + +DLP++ LG+A+V L+ +
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHI 165
>U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform c protein.
Length = 761
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 120 VYTRVPSSFMADLPSLSPLGLAIVILSFV 34
++ R+ + +DLP++ LG+A+V L+ +
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHI 165
>U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform b protein.
Length = 777
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 120 VYTRVPSSFMADLPSLSPLGLAIVILSFV 34
++ R+ + +DLP++ LG+A+V L+ +
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHI 165
>AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome
attachment protein A protein.
Length = 733
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 120 VYTRVPSSFMADLPSLSPLGLAIVILSFV 34
++ R+ + +DLP++ LG+A+V L+ +
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHI 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,782,873
Number of Sequences: 27780
Number of extensions: 190513
Number of successful extensions: 416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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