Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30534.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...    85   2e-17
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            83   1e-16
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            81   3e-16
At4g17250.1 68417.m02594 expressed protein                             28   2.6  
At5g59350.1 68418.m07436 expressed protein predicted protein, Ar...    27   4.6  
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080...    27   8.1  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 39/59 (66%), Positives = 46/59 (77%)
 Frame = +2

Query: 77  EGKSAINEDGTRVYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 253
           E K    E  TR YT+NLH+RLH   FKK+AP+AIKEIRKFAEK+MGT D+RVD +LNK
Sbjct: 3   EKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNK 61



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +1

Query: 148 CWI*KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPFXXXXXXXXXXNDD 327
           C   K  PK+ +   K   K  G         L + +WSKG+R  P           NDD
Sbjct: 27  CTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDD 86

Query: 328 EDSAHKLFTLVTY--VPVASIKGLQTENVD 411
           ED+  + F+LVT   +P   + GL T+ ++
Sbjct: 87  EDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 39/59 (66%), Positives = 45/59 (76%)
 Frame = +2

Query: 77  EGKSAINEDGTRVYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 253
           E K    E  TR YT+NLH+RLH   FKK+AP+AIKEIRKFAEK MGT D+RVD +LNK
Sbjct: 3   EKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK 61



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +1

Query: 148 CWI*KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPFXXXXXXXXXXNDD 327
           C   K  PK+ +   K   K  G         L + +WSKG+R  P           NDD
Sbjct: 27  CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDD 86

Query: 328 EDSAHKLFTLVTY--VPVASIKGLQTENVD 411
           ED+  + F+LVT   +P   + GL T+ ++
Sbjct: 87  EDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 38/59 (64%), Positives = 44/59 (74%)
 Frame = +2

Query: 77  EGKSAINEDGTRVYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 253
           +GK    E  TR YT+NLH+RLH   FKK+AP AIKEIRKFA K MGT D+RVD +LNK
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNK 61



 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 148 CWI*KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPFXXXXXXXXXXNDD 327
           C   K  P + +   K   K  G         L + +WSKG+R  P           NDD
Sbjct: 27  CTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDD 86

Query: 328 EDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 420
           ED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 87  EDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At4g17250.1 68417.m02594 expressed protein
          Length = 416

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 119 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 238
           TV   KR   + +KKR   A+K+   + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208


>At5g59350.1 68418.m07436 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 287

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 50  TMAKPKGEREGKSAINEDGTRVYTVNLHKRLHG--VGFK 160
           ++ +  G REG+ ++NEDG     + L K L+G  +GF+
Sbjct: 72  SLQQNNGGREGEVSMNEDGNPDLELGLMKHLNGGDLGFE 110


>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
           At5g37170, At2g05090
          Length = 566

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 127 FTQTTSWCWI*KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILW 261
           F   T W W    CPK N++   V+  T  ++G   +  +K   W
Sbjct: 295 FAIDTDWGWFYFGCPKCNRKTELVKEST--STGKMVKTPMKPKFW 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,801
Number of Sequences: 28952
Number of extensions: 176281
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)