Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30532.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 80 3e-16
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 79 5e-16
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 68 1e-12
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.1
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 26 5.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 5.4
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 79.8 bits (188), Expect = 3e-16
Identities = 39/68 (57%), Positives = 46/68 (67%)
Frame = +3
Query: 240 QEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 419
++ E I KRAE Y EYR ER++I L R+AR GNYYVP E KL FVIRIRGIN + PK
Sbjct: 47 KKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPK 106
Query: 420 SVKFCNCL 443
+ K L
Sbjct: 107 ARKIMQLL 114
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +1
Query: 496 EYATFAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
E EPY+ +G PNLK+VREL+YKRGF K++ QRI ++
Sbjct: 133 EMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALS 172
Score = 45.2 bits (102), Expect = 8e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ RK++QL RL QINNGVFV+ NKAT ML+
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQ 136
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 79.0 bits (186), Expect = 5e-16
Identities = 38/68 (55%), Positives = 47/68 (69%)
Frame = +3
Query: 240 QEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 419
++ E I KRAE Y EYR ER++I LAR+AR GNY+VP E KL FV+RIRGIN + PK
Sbjct: 46 KKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPK 105
Query: 420 SVKFCNCL 443
+ K L
Sbjct: 106 ARKIMQLL 113
Score = 54.4 bits (125), Expect = 1e-08
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +1
Query: 496 EYATFAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
E EPY+ +G PN K+VREL+YKRGF K++ QRIP++
Sbjct: 132 EMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLS 171
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = +3
Query: 258 FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCN 437
FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+ + PK K
Sbjct: 51 FKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLR 110
Query: 438 CL 443
L
Sbjct: 111 LL 112
Score = 55.6 bits (128), Expect = 6e-09
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +G PNL SVREL+YKRGF K++GQRI ++
Sbjct: 137 EPYVMYGIPNLHSVRELIYKRGFGKINGQRIALS 170
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
++RKVL+L RL +INN VFVR NKA MLR
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 264 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 365
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 216 AKEAFFCHQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGN 347
AKE FF HQ E ++ ++ +K +R +E DE+ + + N
Sbjct: 47 AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 302 FLDAVFLDVLFSPLEDSLFFLMAEERLFSVTC 207
FL +V+ + S +ED L E+++FSV C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,768
Number of Sequences: 5004
Number of extensions: 48770
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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