Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30532.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 70 1e-12
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 69 2e-12
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 44 1e-04
10_08_0304 - 16640937-16642877 28 7.4
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 7.4
12_02_0502 - 19746100-19746185,19746745-19750474 27 9.7
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 27 9.7
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.7
02_03_0221 - 16554910-16555560 27 9.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/63 (50%), Positives = 45/63 (71%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIRGIN + PK+ K
Sbjct: 47 IFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKIL 106
Query: 435 NCL 443
L
Sbjct: 107 QLL 109
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 612
EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+
Sbjct: 134 EPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 166
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ RK+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLR 131
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN + PK+ K
Sbjct: 46 IFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKIL 105
Query: 435 NCL 443
L
Sbjct: 106 QLL 108
Score = 64.5 bits (150), Expect = 7e-11
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T
Sbjct: 133 EPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLT 166
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ RK+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLR 130
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EP+I +G+PNLK+V++L+YK+G L + P+T
Sbjct: 136 EPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLT 169
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 246 EEGIFKRAEQYVKEY-RIKERDEIRLARQARNRGNY 350
E G+ +R+ + +E R++ D+I LAR A RG Y
Sbjct: 473 ESGVAERSVEVDRELVRVEAIDDIALARAAAERGEY 508
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 519 LHCLGIPQLKECP*VSIQTWIRQAEW 596
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>12_02_0502 - 19746100-19746185,19746745-19750474
Length = 1271
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSSS*WQKNASLA*PVIS*CEEPLS 179
L SL + L R SL CS++ K+PS ++ +L +I+ CE LS
Sbjct: 1027 LMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLS 1075
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 553 HSLSWGIPKQCKARRT*HIHSSLIQTYKHTIV 458
H +W I K CK+ IH + KH I+
Sbjct: 89 HDFTWLIDKYCKSLSELKIHHKIANDIKHDII 120
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 337 IVATTTFPGKPNWHLSSESVVSTKFH 414
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
>02_03_0221 - 16554910-16555560
Length = 216
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 281 DVLFSPLEDSLFFLMAEERLFSVTCNLLVRRASL--LLRCLSTDSGTAGSFLLSSFPLT 111
DVL L ++F +A V C V + LL + +G AGSFL + FP T
Sbjct: 146 DVLHGALSFAVFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFPST 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,186,937
Number of Sequences: 37544
Number of extensions: 309960
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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