Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30532.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       90   1e-18
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    30   1.9  
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)                 29   3.3  
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)             28   5.7  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    27   9.9  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 43/69 (62%), Positives = 52/69 (75%)
 Frame = +3

Query: 237 HQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 416
           H + + IFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSP
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100

Query: 417 KSVKFCNCL 443
           K  K    L
Sbjct: 101 KVRKILQLL 109



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +2

Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
           +VRK+LQL RLRQINNGVFVRLNKAT NMLR
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLR 131



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
           +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T
Sbjct: 134 QPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALT 167


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 322 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 459
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 222 EAFFCHQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVP 359
           + +      +G+   +E+Y    +I  RD   +AR+ R+RG YY+P
Sbjct: 460 DPYVYESSSDGVQSISEKYRSSGKI--RDTSSIARETRSRGPYYLP 503


>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
          Length = 458

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +1

Query: 226 RSSAIKKKRESSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVST 405
           +++A  K   ++ G + TSR+T       S    K A   T +   +P+W L+S + VS 
Sbjct: 155 KTTASIKNVPTTNGPSKTSRSTDGEESAGSTHTKKPAKDDTDSSADEPDWDLTS-AFVSR 213

Query: 406 KFHRSP*SSATV 441
              R+P S+ TV
Sbjct: 214 AAGRNPTSTTTV 225


>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
          Length = 1220

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 207 TGYAKEAFFCHQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 350
           TGY    F C +  +G FKR  Q   EY  +   +  + +  RNR  Y
Sbjct: 831 TGYHYGVFTC-EGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQY 877


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 214  TLKRRSSAIKKKRESSRGLNSTSRNTASRNVMKSD 318
            T+ RR   +KKKRE +    S SRN     V +SD
Sbjct: 949  TIDRRRKRLKKKREVTDSFRSYSRNEIFFWVTQSD 983


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,981,113
Number of Sequences: 59808
Number of extensions: 373700
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)