Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30532.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    76   2e-14
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    34   0.100
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80836-2|AAV58890.1|  454|Caenorhabditis elegans Abnormal catech...    29   2.8  
U80836-1|AAV58889.1|  393|Caenorhabditis elegans Abnormal catech...    29   2.8  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   2.8  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   2.8  
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z77657-8|CAB01151.2|  386|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/57 (57%), Positives = 46/57 (80%)
 Frame = +3

Query: 258 FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 428
           FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 47  FKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 22/34 (64%), Positives = 30/34 (88%)
 Frame = +1

Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
           EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT
Sbjct: 133 EPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPIT 166



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +2

Query: 422 RKVLQLFRLRQINNGVFVRLNKATVNMLR 508
           RK LQ+ RLRQINNGVFV+LNKAT+ +LR
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLR 130


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +1

Query: 241 KKKRESSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 420
           KK+R+ SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 421 P*SSATV*TAP 453
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 350  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 484
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>U80836-2|AAV58890.1|  454|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 2, isoform b protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -3

Query: 643 EPLLNNAVGK*LVYVVHSAWRIHVC-ILTHGHSLSWGIPKQCKARRT*HIHSSLIQTYKH 467
           +P L+N V   L  +  S+ ++ +C + T G+  S  +   CKA +   IHS+ + T  H
Sbjct: 37  DPTLSNFVSDILQNM--SSAKVQICHVETRGNEASHDVLLACKATKNQLIHSAELLTQNH 94

Query: 466 TIV--YLAQSKQLQNFTDFGETWLIPR 392
             +  +   +K+L +  +  + W  PR
Sbjct: 95  VALTKFSIFAKKLSDEKNQSQIW-FPR 120


>U80836-1|AAV58889.1|  393|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 2, isoform a protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -3

Query: 643 EPLLNNAVGK*LVYVVHSAWRIHVC-ILTHGHSLSWGIPKQCKARRT*HIHSSLIQTYKH 467
           +P L+N V   L  +  S+ ++ +C + T G+  S  +   CKA +   IHS+ + T  H
Sbjct: 107 DPTLSNFVSDILQNM--SSAKVQICHVETRGNEASHDVLLACKATKNQLIHSAELLTQNH 164

Query: 466 TIV--YLAQSKQLQNFTDFGETWLIPR 392
             +  +   +K+L +  +  + W  PR
Sbjct: 165 VALTKFSIFAKKLSDEKNQSQIW-FPR 190


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 350  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 484
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 350  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 484
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
 Frame = +1

Query: 220 KRRSSAIKKKRESSRGLNST--------SRNTASRNVMKSD*PDKHAIVATTTFPGKPNW 375
           KRR    ++KR SSR  +S+        +R+T+S  +MK + P K+A +    +    + 
Sbjct: 172 KRRKKERRRKRSSSRSSSSSRSRDRSSRARDTSSHTLMKMNKPAKYAFLTDEEY-RTCDA 230

Query: 376 HLSSESVVSTK 408
           ++SS  +  TK
Sbjct: 231 YISSAFITQTK 241


>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
 Frame = +1

Query: 220 KRRSSAIKKKRESSRGLNST--------SRNTASRNVMKSD*PDKHAIVATTTFPGKPNW 375
           KRR    ++KR SSR  +S+        +R+T+S  +MK + P K+A +    +    + 
Sbjct: 172 KRRKKERRRKRSSSRSSSSSRSRDRSSRARDTSSHTLMKMNKPAKYAFLTDEEY-RTCDA 230

Query: 376 HLSSESVVSTK 408
           ++SS  +  TK
Sbjct: 231 YISSAFITQTK 241


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 341 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 463
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>Z77657-8|CAB01151.2|  386|Caenorhabditis elegans Hypothetical
           protein F08H9.7 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 638 SSQQCCWKVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSANVAYS 495
           S Q    K +   CP   +   LYT S T+   GYP     + N  YS
Sbjct: 140 SIQPAVCKQMPALCPTQTSYGGLYTRSGTITSPGYPTQYYNNLNCLYS 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,436
Number of Sequences: 27780
Number of extensions: 269915
Number of successful extensions: 668
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)