Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30532.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.5  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 213 YAKEAFFCHQEEEGIFKRAEQYVKEYRIKERDEIR 317
           YA + FF    ++   +  E    EYR+ E D ++
Sbjct: 82  YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 286 SLTYCSALLKIPSSS*WQK 230
           SLT  SA   IPS++ WQ+
Sbjct: 429 SLTKASATFGIPSTTLWQR 447


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 189 SSH*EITGYAKEAFFCHQEEEGIFKRA 269
           + H E+ G  K +   + E  GIFKRA
Sbjct: 32  TGHQEMQGKEKNSASLNSENFGIFKRA 58


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 387 RIRGINQVSPKSVKFCNCLDC 449
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 249 EGIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 350
           +G FKR  +    Y  +E     + ++ RNR  Y
Sbjct: 131 KGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQY 164


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 249 EGIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 350
           +G FKR  +    Y  +E     + ++ RNR  Y
Sbjct: 131 KGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQY 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,294
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)