Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30532.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 77 1e-14
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 77 1e-14
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 76 2e-14
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 75 4e-14
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 75 4e-14
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 75 4e-14
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 47 9e-06
At2g24240.1 68415.m02895 potassium channel tetramerisation domai... 29 2.0
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 2.7
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 28 4.7
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 28 4.7
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 28 6.1
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 8.1
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 8.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 49 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 108
Query: 435 NCL 443
L
Sbjct: 109 QLL 111
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T
Sbjct: 136 EPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALT 169
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ +K+LQL RLRQI NGVF+++NKATVNMLR
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLR 133
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 44 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 103
Query: 435 NCL 443
L
Sbjct: 104 QLL 106
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T
Sbjct: 131 EPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALT 164
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ +K+LQL RLRQI NGVF+++NKATVNMLR
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLR 128
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 44 IFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 103
Query: 435 NCL 443
L
Sbjct: 104 QLL 106
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/34 (64%), Positives = 30/34 (88%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T
Sbjct: 131 EPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALT 164
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLR 128
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 74.9 bits (176), Expect = 4e-14
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 46 IFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 105
Query: 435 NCL 443
L
Sbjct: 106 QLL 108
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T
Sbjct: 133 EPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLR 130
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 74.9 bits (176), Expect = 4e-14
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 46 IFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 105
Query: 435 NCL 443
L
Sbjct: 106 QLL 108
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T
Sbjct: 133 EPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLR 130
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 74.9 bits (176), Expect = 4e-14
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 434
IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 46 IFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 105
Query: 435 NCL 443
L
Sbjct: 106 QLL 108
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T
Sbjct: 133 EPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 416 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLR 130
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 261 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 440
KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N
Sbjct: 50 KRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNN 109
Query: 441 L 443
L
Sbjct: 110 L 110
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 514 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 615
+PY+ +GYPN KSV++L+YK+G + G +P+T
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLT 168
>At2g24240.1 68415.m02895 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 441
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 389 SDDKCQFGFPGNVVVATIACLSG*SDFITFLDAVFLDVL-FSPLEDSLFFLMAEERLFSV 213
S D+ +F G + T L+ + +F A+F D SPLEDS+ F+ F+V
Sbjct: 4 SKDRIKFNVGGRLFETTATTLAN-AGRDSFFGALFDDEWNLSPLEDSILFVDRNSDCFAV 62
Query: 212 TCNLL 198
+LL
Sbjct: 63 LLDLL 67
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 265 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 420
G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
similar to disease resistance protein RPP1-WsB
(GI:3860165) [Arabidopsis thaliana]
Length = 1996
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSS 245
L L ++ +L R L+YC +L++IPSS
Sbjct: 584 LPDLSNATNLERLELSYCKSLVEIPSS 610
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSS 245
L L ++ +L R L+YC +L++IPSS
Sbjct: 640 LPDLSNATNLERMDLSYCESLVEIPSS 666
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSS 245
L L ++ +L R S+ CS+L+K+PSS
Sbjct: 713 LPDLSTATNLQRLSIERCSSLVKLPSS 739
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 371 IGICHPNPWYQPSFTEVRKVL 433
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 448 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 353
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,092,376
Number of Sequences: 28952
Number of extensions: 253861
Number of successful extensions: 717
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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