Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30529.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.76 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRH 251
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 10  SGSCFSKHVKNSLNINKII*QNKYFKIE*AIXCVGIYSNDFIFLYRIENSSK 165
           SG  FSK        N ++  N Y + +    C+ + S    FLY  +N ++
Sbjct: 40  SGDRFSKDFYRQDTKNNLL--NAYVRFKLVTDCIFVTSEPGYFLYTSKNDNE 89


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 156 LIKMAKSKNHTNHNQNRKAHRN 221
           LI   +  N  N N N+  H N
Sbjct: 577 LIMNTRCANSDNQNNNQNKHNN 598


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 213  HRNGIKKPRKTRHEPPLA 266
            H NGI +  K  +EP LA
Sbjct: 1139 HSNGIIQGYKLHYEPILA 1156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 213  HRNGIKKPRKTRHEPPLA 266
            H NGI +  K  +EP LA
Sbjct: 1135 HSNGIIQGYKLHYEPILA 1152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,704
Number of Sequences: 438
Number of extensions: 1705
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)