Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30528.Seq
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 95 1e-20
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 95 1e-20
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 33 0.040
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 29 0.49
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 3.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.1
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.0
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/59 (71%), Positives = 50/59 (84%)
Frame = +2
Query: 80 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++K
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKK 75
Score = 80.2 bits (189), Expect = 3e-16
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSA-NPLRSFTW-WKY*VPCA 204
MGI+RD HKR ATG + + ++ + + + P + +R K+
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 205 ASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 384
SG+ G + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY
Sbjct: 61 DSGN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118
Query: 385 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 507
+ +G KG K T +S+ RK+ AR +KV+
Sbjct: 119 ILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVD 153
Score = 65.7 bits (153), Expect = 6e-12
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +3
Query: 510 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKI 635
ALE QF GRL A V+SRPGQ GR DGYILEG+EL FYLR++
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/59 (71%), Positives = 50/59 (84%)
Frame = +2
Query: 80 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++K
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKK 75
Score = 79.4 bits (187), Expect = 5e-16
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSA-NPLRSFTW-WKY*VPCA 204
MGI+RD HKR ATG + + ++ + + + P + +R K+
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 205 ASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 384
SG+ G + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY
Sbjct: 61 DSGN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118
Query: 385 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 507
+ +G KG K T +S+ RK+ AR +KV+
Sbjct: 119 ILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVD 153
Score = 65.7 bits (153), Expect = 6e-12
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +3
Query: 510 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKI 635
ALE QF GRL A V+SRPGQ GR DGYILEG+EL FYLR++
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 33.1 bits (72), Expect = 0.040
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 624 DRTRVLCLLRCNHRRDHTDLGDSPRKPANALCGIALLEHL 505
D + CLLR H+RD + + RK N L G LLE +
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLEEM 473
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 59 SEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 208
S+G K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 35 SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 113 ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKP 259
EL +N + Q+ + S T YRA+ LDTG+ E + KP
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKP 1156
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 368 YHCLNGVASTTTIAFLTRVFVRTNS 294
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 8.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Frame = -2
Query: 285 CIIHNINDTGLRVEHSDPQEKLPVS-RRSA---RYL-------VFPPRERTEWIR*GPSL 139
C + ++NDT +E S + LP+ +R A RY+ + P TEW+ S+
Sbjct: 348 CFLIHLNDTNHNLEFSTTSQPLPLEWQRWAVDPRYIKLFGSNAILPNEWVTEWVE--QSI 405
Query: 138 VFAAGRPNSYFLFLRMGARFPAGGPSLMPVIP 43
AAG + RM G PSL +P
Sbjct: 406 SVAAGIVAQMYTSKRMA----LGDPSLFAGLP 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,754
Number of Sequences: 5004
Number of extensions: 53957
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -