Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30528.Seq
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 97 2e-20
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 94 8e-20
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.22
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 30 1.6
03_01_0350 - 2753217-2754152 29 4.8
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 29 4.8
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 4.8
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 28 6.3
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 96.7 bits (230), Expect = 2e-20
Identities = 68/165 (41%), Positives = 91/165 (55%), Gaps = 11/165 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEE--EV*VRASRCKHQARPSANPLRSFTW-WKY*VPC 201
MGISRD HKRRATG + A ++ E+ + + K + + +R K+
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 202 AASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 381
+G+ G +TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 61 LDTGN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 382 TLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQR 492
+ +GRKK A+ E E A K+S RK RQ+
Sbjct: 119 GVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQ 163
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75
Query: 254 K 256
K
Sbjct: 76 K 76
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/47 (74%), Positives = 44/47 (93%)
Frame = +3
Query: 513 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIQV*EGE 653
+EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K+Q +G+
Sbjct: 171 IEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 94.3 bits (224), Expect = 8e-20
Identities = 65/145 (44%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD HKRRATG + A ++ + R + S+N T + V
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKY--ELGRQPANTKLSSNK----TVRRVRVRGGNV 54
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
R L L G ++ +TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY
Sbjct: 55 KWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114
Query: 370 ESHYTLPLGRKKGAKLT--EAEEAI 438
+HY + +GRKK A +AE A+
Sbjct: 115 LTHYGVDIGRKKKAPAAKKDAEHAL 139
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 254 K 256
K
Sbjct: 76 K 76
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/47 (74%), Positives = 44/47 (93%)
Frame = +3
Query: 513 LEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIQV*EGE 653
+EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K+Q +G+
Sbjct: 188 IEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +2
Query: 74 AGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 238
AG+ R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 261 AGELFTWGSNREGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 309 CTHQFIVRCIIHNINDTGLRVEHSDPQEKL--PVSRRSARYLVFPPRERTEWIR*GPSLV 136
C H+F ++C ++ + + RVE + P + P+ R P TE ++ +L
Sbjct: 316 CCHEFCIKCALYLCSTSNTRVEFTGPPGSIPCPLCRNGIMSFTKLPSTPTEGLKSSSALT 375
Query: 135 F 133
F
Sbjct: 376 F 376
>03_01_0350 - 2753217-2754152
Length = 311
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 53 GISEGPPAGKRAPIRKKRKYELGRPAANTR 142
G + PPA KR P R+++ +G A +TR
Sbjct: 242 GAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 158 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKPVSLMLC 277
+H+ R G+ +Y R G F G +C TR +LC
Sbjct: 1523 VHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLC 1562
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 282 IIHNINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 163
++ + D G RV H + QEKL RR ++ P R+ TE
Sbjct: 288 VVDGVGDRGARVNHGEIQEKL---RRELDTVLGPGRQITE 324
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +2
Query: 26 LRWVLVGITGISEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRAL 205
LR L G S GP +R K+ + G A + GP+ SVRS + ++
Sbjct: 24 LRGELNGRGDASNGPTVQRRVAEPKEDDEQDGSEAGSNA-GPRGAASVRSADSSREFIVK 82
Query: 206 RLDTGNFSWGSE 241
+D G GS+
Sbjct: 83 EIDVGGLPNGSD 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,202,883
Number of Sequences: 37544
Number of extensions: 392471
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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