Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30527.Seq
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 173 2e-44
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 173 3e-44
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 173 3e-44
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 100 5e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 95 7e-21
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 75 1e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.034
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 32 0.10
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.24
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.24
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.55
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.9
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 27 3.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 173 bits (421), Expect = 2e-44
Identities = 84/125 (67%), Positives = 98/125 (78%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFV 614
QTREHALLA+TLGVKQLIV VNKMD + ++ + +++G+NP V FV
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFV 189
Query: 615 XISGW 629
+SG+
Sbjct: 190 PVSGF 194
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +2
Query: 524 YSEPRFEEIKKEVSSYIKKIGLQPSCCRFRXHFWMGTETTCWEPSTKMLGFXGWQVXRKE 703
+S+ RFEEI KE S++IKK+G P F + EP+T M + GWQ K
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMI-EPTTNMPWYQGWQKETKA 218
Query: 704 G 706
G
Sbjct: 219 G 219
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 173 bits (420), Expect = 3e-44
Identities = 83/125 (66%), Positives = 98/125 (78%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFV 614
QTREHALLA+TLGVKQLIV VNKMD + ++ + +++G+NP V FV
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFV 189
Query: 615 XISGW 629
+SG+
Sbjct: 190 PVSGF 194
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +2
Query: 524 YSEPRFEEIKKEVSSYIKKIGLQPSCCRFRXHFWMGTETTCWEPSTKMLGFXGWQVXRKE 703
+S+ RFEEI KE S++IKK+G P F + EP+T M + GWQ K
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMI-EPTTNMPWYQGWQKETKA 218
Query: 704 G 706
G
Sbjct: 219 G 219
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 173 bits (420), Expect = 3e-44
Identities = 83/125 (66%), Positives = 98/125 (78%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 435 QTREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFV 614
QTREHALLA+TLGVKQLIV VNKMD + ++ + +++G+NP V FV
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFV 189
Query: 615 XISGW 629
+SG+
Sbjct: 190 PVSGF 194
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +2
Query: 524 YSEPRFEEIKKEVSSYIKKIGLQPSCCRFRXHFWMGTETTCWEPSTKMLGFXGWQVXRKE 703
+S+ RFEEI KE S++IKK+G P F + EP+T M + GWQ K
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMI-EPTTNMPWYQGWQKETKA 218
Query: 704 G 706
G
Sbjct: 219 G 219
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 99.5 bits (237), Expect = 5e-22
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
Query: 435 QTREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRKYPHTSRRL-GYNPAA-VA 608
QTREHA+LA T G+ L+V +NKMD + ++ K RR+ GYN V
Sbjct: 363 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVK 422
Query: 609 FVXISGW 629
++ +S +
Sbjct: 423 YMPVSAY 429
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 235 AERE 246
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 95.5 bits (227), Expect = 7e-21
Identities = 45/85 (52%), Positives = 56/85 (65%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NG
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
Query: 435 QTREHALLAFTLGVKQLIVGVNKMD 509
QTREHA L LG+ +++V VNK+D
Sbjct: 302 QTREHAYLLRALGISEIVVSVNKLD 326
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 235 AER 243
ER
Sbjct: 235 EER 237
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 524 YSEPRFEEIKKEVSSY-IKKIGLQPSCCRF 610
+SE RF+EIK VS + IK +G + S F
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHF 359
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 103 TISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP------- 155
Query: 435 QTREHALLAFTLGVKQLIVGVNKMD 509
QTREH LLA +GVKQ++V +NK+D
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVD 180
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 135
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 476
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 477 KQLIVGVNKMD 509
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 449
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI 144
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.034
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 279 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 31.9 bits (69), Expect = 0.10
Identities = 27/85 (31%), Positives = 39/85 (45%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 80 TINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EA 132
Query: 435 QTREHALLAFTLGVKQLIVGVNKMD 509
QT+ A G+ ++I VNKMD
Sbjct: 133 QTKVVWKQATKRGIPKVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 0.97
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCG 138
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 270 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.7 bits (66), Expect = 0.24
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 473
Y + +ID+PGH DF + + + D A ++V A G I+ Q A+
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQ-------AWIDR 146
Query: 474 VKQLIVGVNKMDPL 515
+K ++V +NKMD L
Sbjct: 147 IKVILV-INKMDRL 159
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIV 389
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 3.9
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 383 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCIXXSRSAFSLSNTQAYL 204
EH+A+ L S +L IS R N GNI L S + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 203 KDPLPI 186
K LPI
Sbjct: 62 KALLPI 67
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 258 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 344
I+I + E +++ T+ID PG DFI N
Sbjct: 73 IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 229 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 101
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,967
Number of Sequences: 5004
Number of extensions: 65189
Number of successful extensions: 244
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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