Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30526.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    59   3e-10
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    30   0.17 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   2.7  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    25   8.4  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 59.3 bits (137), Expect = 3e-10
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 32  FKLWTHTNVEMQILTELSATLLGT--SDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVY 205
           F +  H+  + +    +  TLLGT   D   +E+ +CF VPH E ++QVE E+ Y   +Y
Sbjct: 31  FSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMY 90

Query: 206 ELNRRVNSSESIVGWW 253
            L+ + N  E +VGW+
Sbjct: 91  HLHLKANPREVVVGWY 106



 Score = 33.1 bits (72), Expect = 0.024
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGHLIG 99
           +++ + P VLF I+D   R++ ++ RVIG L+G
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLG 53


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER-RNADSHRVIGHLIG 99
           V VHP+VL   VD+Y R       RV+G L+G
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLG 48


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 65   QILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYEL 211
            Q + EL+  L   S+  VVE    F    K + +++       +DVYEL
Sbjct: 2837 QYIFELAMRLSKESNIAVVEEAKSFVTKWKAYIERIREAYPQFVDVYEL 2885


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 53  NVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKE 157
           +V++Q +T + A  +   +   V V NC  +PHKE
Sbjct: 372 SVKVQAITVMGADCIVHDE---VRVQNCLVLPHKE 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,147
Number of Sequences: 5004
Number of extensions: 41474
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)