Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30526.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 50 1e-06
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 45 3e-05
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 34 0.073
02_05_1027 - 33602170-33602622,33602912-33603013 29 1.6
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 2.1
11_01_0433 - 3323372-3324616,3324708-3324905 28 3.6
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 4.8
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 4.8
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 27 6.3
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 27 8.4
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 27 8.4
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 27 8.4
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 TLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
TLLG+ G V V N + VPH E DQV ++ Y ++Y + +VN E IVGW+
Sbjct: 46 TLLGSVLPDGTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIVGWF 101
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 256 TGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYXXXPLGVPNGKXGCXXTP 435
TG V+ S++IH++YSR + P+H+T+DT G ++AY L + +
Sbjct: 103 TGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQE 162
Query: 436 VDVTLTCYEPEIVGLQV 486
+ + L E VG +
Sbjct: 163 IPLDLRMLEAGKVGFDI 179
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRNADSHRVIGHLIG 99
S +V VV+F I D+Y RR + RVIG L+G
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLG 49
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 LSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 253
++ LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 33.9 bits (74), Expect = 0.073
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 92 LLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNS 229
LLGTS +G V+VTN + VP +E + NY ++ + +R+N+
Sbjct: 46 LLGTSSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINA 94
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGHLIG 99
V VHP+VL IVD Y R D+ RV+G L+G
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLG 48
>02_05_1027 - 33602170-33602622,33602912-33603013
Length = 184
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 254 PTNQQYFQRN*LFCSARKHPSRN*VPLRLDRHVLC-VARRSSWLLPPLLCRSCPIRWPIT 78
P +Y+ RN S H V LD + LC V R +LLP LL R C + P+
Sbjct: 124 PPTVEYYSRNPHQNSHHDHEQHG-VLKYLDLNNLCLVIRAPLFLLPDLLLRLCIVALPLC 182
Query: 77 L 75
L
Sbjct: 183 L 183
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 419 PXFPFGTPNGXXXYARKPIRPPASEVSRVTWTG 321
P PF +P +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 128
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 128
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 99 ARATKEWWK*PTASACHTKN-MPIKSK 176
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 280 SSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYXXXPLGVPNGKXGCXXTPVDVTLTCY 459
SSV H ++ R + D A M ++ + P VP GK +PVD+ Y
Sbjct: 407 SSVCH-FFGYQARGSLPSNFDCDYAYAMMSVKRHSRSPGAVPTGKPVIHPSPVDLQGKAY 465
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVW 146
D++V L+ IH+ I F F ++FVW
Sbjct: 327 DAAVVLMLIHQFITFGFACTPLYFVW 352
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 286 QRSGWLLHCQSPPTNNTFRGIDSSV-QLVNIHR 191
Q G +HC++PP+ N + S+ + ++I R
Sbjct: 427 QDEGTAIHCEAPPSENLLSSVSGSLRRFIDIFR 459
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVW 146
D++V L+ IH+ I F F ++FVW
Sbjct: 337 DAAVVLMLIHQFITFGFACTPLYFVW 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,540
Number of Sequences: 37544
Number of extensions: 293082
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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