Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30526.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.099
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   28   3.7  
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             28   4.9  
SB_46040| Best HMM Match : PTN_MK_N (HMM E-Value=5.4)                  27   8.6  
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)                 27   8.6  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVP-HKEHADQVEAELNYAMD 199
           L   K+  H   E      +   LLG      +E+TNCF  P +K   D+ + ++NY M+
Sbjct: 23  LTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQME 82

Query: 200 VYELNRRVNSSESIVGWW 253
           V    R VN     VGW+
Sbjct: 83  VMRRLRAVNIDHLHVGWY 100


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +2

Query: 92  LLGTSDKGVVEVTNCFCVPHKE-HADQVE--AELNYAMDVYELNRRVN 226
           LLG+  KGV++V NCF VP  E   DQ     + +Y  ++Y + ++VN
Sbjct: 41  LLGSRRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMYAMFKKVN 88



 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYER--RNADSHRVIGHLIGHERQ 111
           +V VHP+VL  +VD + R  +     RV+G L+G  R+
Sbjct: 10  TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRK 47


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 170 VEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*PTTPLLYTSI 301
           V  EL YA  +YEL+++ N +E IVG   + +   T   +++ I
Sbjct: 1   VAVELEYAKSMYELSQKANPNEQIVGCVKMGVPGKTEGTMFSQI 44


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 239 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCP 96
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR  P
Sbjct: 36  YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP 81


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 239 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCP 96
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR+ P
Sbjct: 90  YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP 135


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRF 71
           C G + CFI    R R  KCRF
Sbjct: 78  CRGSNDCFIDKVHRNRCQKCRF 99


>SB_46040| Best HMM Match : PTN_MK_N (HMM E-Value=5.4)
          Length = 248

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 182 VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRWPITL*ESAF 60
           +P R  +   C+A+++  +L    C  C ++W +TL +  F
Sbjct: 17  LPSRTRKERSCIAKQNGDVLLDFPCDVCGVQWSLTLRKHEF 57


>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 979

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +2

Query: 116 VVEVTNCFCVPHKEHADQVEAELNYAMDVYELN----RRVNSSESIVG 247
           ++ + +C  + HKEHAD+ E++   A+ ++ LN    R + + E  VG
Sbjct: 706 IIALNSCRVMLHKEHADE-ESDYINAVFLHRLNSFTSREIPAEEKSVG 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,335
Number of Sequences: 59808
Number of extensions: 333602
Number of successful extensions: 1023
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)