SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30526.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94855-1|AAD03467.1|  357|Homo sapiens translation initiation fa...    99   1e-20
CR456959-1|CAG33240.1|  357|Homo sapiens EIF3S5 protein.               99   1e-20
BT006894-1|AAP35540.1|  357|Homo sapiens eukaryotic translation ...    99   1e-20
BC000490-1|AAH00490.1|  357|Homo sapiens eukaryotic translation ...    99   1e-20
AK095574-1|BAC04577.1|  350|Homo sapiens protein ( Homo sapiens ...    99   1e-20
AF354444-1|AAK18634.1|  348|Homo sapiens IFP38 protein.                85   1e-16
AF092576-1|AAC84044.1|  352|Homo sapiens translation initiation ...    42   0.001
U54559-1|AAD03465.1|  352|Homo sapiens translation initiation fa...    40   0.004
CR456906-1|CAG33187.1|  352|Homo sapiens EIF3S3 protein.               40   0.004
BT019594-1|AAV38401.1|  352|Homo sapiens eukaryotic translation ...    40   0.004
BC000386-1|AAH00386.1|  352|Homo sapiens eukaryotic translation ...    40   0.004
AK222620-1|BAD96340.1|  352|Homo sapiens eukaryotic translation ...    40   0.004
AK222520-1|BAD96240.1|  352|Homo sapiens eukaryotic translation ...    40   0.004
D50063-1|BAA08780.1|  324|Homo sapiens proteasome subunit p40 / ...    39   0.011
BC090880-1|AAH90880.1|  349|Homo sapiens EIF3H protein protein.        39   0.011
BC012606-1|AAH12606.1|  324|Homo sapiens proteasome (prosome, ma...    39   0.011
BC000338-1|AAH00338.1|  326|Homo sapiens PSMD7 protein protein.        39   0.011

>U94855-1|AAD03467.1|  357|Homo sapiens translation initiation
           factor 3 47 kDa subunit protein.
          Length = 357

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 55/160 (34%), Positives = 79/160 (49%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSGT* 186
           V++HPV+L  IVD+YERRN  + RVIG L+G   + S             +         
Sbjct: 92  VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151

Query: 187 LRDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRM 366
                    +K            TG+++T HS +IHEYYSR    P+H+T+DTSL  GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211

Query: 367 GLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIVGLQV 486
            ++AY    +GVP    G   TP+ V    Y+ E +G+ +
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDL 251



 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TLLGT DK  VEVTNCF VPH E  D+V  ++ +A ++YEL+++V+ +E I+GW+
Sbjct: 119 TLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWY 173


>CR456959-1|CAG33240.1|  357|Homo sapiens EIF3S5 protein.
          Length = 357

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 55/160 (34%), Positives = 79/160 (49%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSGT* 186
           V++HPV+L  IVD+YERRN  + RVIG L+G   + S             +         
Sbjct: 92  VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151

Query: 187 LRDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRM 366
                    +K            TG+++T HS +IHEYYSR    P+H+T+DTSL  GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211

Query: 367 GLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIVGLQV 486
            ++AY    +GVP    G   TP+ V    Y+ E +G+ +
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDL 251



 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TLLGT DK  VEVTNCF VPH E  D+V  ++ +A ++YEL+++V+ +E I+GW+
Sbjct: 119 TLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWY 173


>BT006894-1|AAP35540.1|  357|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 5 epsilon, 47kDa protein.
          Length = 357

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 55/160 (34%), Positives = 79/160 (49%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSGT* 186
           V++HPV+L  IVD+YERRN  + RVIG L+G   + S             +         
Sbjct: 92  VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151

Query: 187 LRDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRM 366
                    +K            TG+++T HS +IHEYYSR    P+H+T+DTSL  GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211

Query: 367 GLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIVGLQV 486
            ++AY    +GVP    G   TP+ V    Y+ E +G+ +
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDL 251



 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TLLGT DK  VEVTNCF VPH E  D+V  ++ +A ++YEL+++V+ +E I+GW+
Sbjct: 119 TLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWY 173


>BC000490-1|AAH00490.1|  357|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 5 epsilon, 47kDa protein.
          Length = 357

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 55/160 (34%), Positives = 79/160 (49%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSGT* 186
           V++HPV+L  IVD+YERRN  + RVIG L+G   + S             +         
Sbjct: 92  VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151

Query: 187 LRDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRM 366
                    +K            TG+++T HS +IHEYYSR    P+H+T+DTSL  GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211

Query: 367 GLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIVGLQV 486
            ++AY    +GVP    G   TP+ V    Y+ E +G+ +
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDL 251



 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TLLGT DK  VEVTNCF VPH E  D+V  ++ +A ++YEL+++V+ +E I+GW+
Sbjct: 119 TLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWY 173


>AK095574-1|BAC04577.1|  350|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
           EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
          Length = 350

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 55/160 (34%), Positives = 79/160 (49%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSGT* 186
           V++HPV+L  IVD+YERRN  + RVIG L+G   + S             +         
Sbjct: 85  VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 144

Query: 187 LRDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRM 366
                    +K            TG+++T HS +IHEYYSR    P+H+T+DTSL  GRM
Sbjct: 145 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 204

Query: 367 GLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIVGLQV 486
            ++AY    +GVP    G   TP+ V    Y+ E +G+ +
Sbjct: 205 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDL 244



 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TLLGT DK  VEVTNCF VPH E  D+V  ++ +A ++YEL+++V+ +E I+GW+
Sbjct: 112 TLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWY 166


>AF354444-1|AAK18634.1|  348|Homo sapiens IFP38 protein.
          Length = 348

 Score = 85.0 bits (201), Expect = 1e-16
 Identities = 52/156 (33%), Positives = 78/156 (50%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSGT* 186
           V++HPV+L   VD+YERRN  + RVIG L+G   + S         +   +         
Sbjct: 82  VRLHPVLLASTVDSYERRNKGAARVIGTLLGTVNKHSVEVTNCFSVSYNESDEVVVDMEF 141

Query: 187 LRDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRM 366
            ++     ++ S       W    G+++T HS +IHEYYSR    P+H+T+DTSL  G M
Sbjct: 142 AKNMYELHKKVSPNELILGWYAA-GHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGHM 200

Query: 367 GLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIV 474
            ++AY    +GVP    G   TP+ V    Y+ E +
Sbjct: 201 SIKAYVSTLMGVPGRTVG-VFTPLTVKYAYYDTECI 235



 Score = 59.3 bits (137), Expect = 7e-09
 Identities = 26/55 (47%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TLLGT +K  VEVTNCF V + E +D+V  ++ +A ++YEL+++V+ +E I+GW+
Sbjct: 109 TLLGTVNKHSVEVTNCFSVSYNE-SDEVVVDMEFAKNMYELHKKVSPNELILGWY 162


>AF092576-1|AAC84044.1|  352|Homo sapiens translation initiation
           factor eIF3 p40 subunit protein.
          Length = 352

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 25/77 (32%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   K  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVKDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>U54559-1|AAD03465.1|  352|Homo sapiens translation initiation
           factor eIF3 p40 subunit protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>CR456906-1|CAG33187.1|  352|Homo sapiens EIF3S3 protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>BT019594-1|AAV38401.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>BC000386-1|AAH00386.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>AK222620-1|BAD96340.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa variant
           protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>AK222520-1|BAD96240.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa variant
           protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDV 202
           L   K+  H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++
Sbjct: 44  LVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEM 103

Query: 203 YELNRRVNSSESIVGWW 253
               R VN     VGW+
Sbjct: 104 MRSLRHVNIDHLHVGWY 120


>D50063-1|BAA08780.1|  324|Homo sapiens proteasome subunit p40 /
           Mov34 protein protein.
          Length = 324

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +2

Query: 92  LLGTSDKGVVEVTNCFCVPHKEHA--DQVE-AELNYAMDVYELNRRVNSSESIVGWW 253
           LLG+  K V++V+N F VP  E    D V   + +Y  ++Y + ++VN+ E IVGW+
Sbjct: 39  LLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWY 95



 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGHLIG 99
           V VHP+VL  +VD + R  +  +  RV+G L+G
Sbjct: 9   VVVHPLVLLSVVDHFNRIVKVGNQKRVVGVLLG 41


>BC090880-1|AAH90880.1|  349|Homo sapiens EIF3H protein protein.
          Length = 349

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +2

Query: 38  LWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNR 217
           ++ H   E Q    +   LLG   +  +E+TNCF  P     D    E+ Y M++    R
Sbjct: 46  VFKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLR 105

Query: 218 RVNSSESIVGWW 253
            VN     VGW+
Sbjct: 106 HVNIDHLHVGWY 117


>BC012606-1|AAH12606.1|  324|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
           protein.
          Length = 324

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +2

Query: 92  LLGTSDKGVVEVTNCFCVPHKEHA--DQVE-AELNYAMDVYELNRRVNSSESIVGWW 253
           LLG+  K V++V+N F VP  E    D V   + +Y  ++Y + ++VN+ E IVGW+
Sbjct: 39  LLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWY 95



 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGHLIG 99
           V VHP+VL  +VD + R  +  +  RV+G L+G
Sbjct: 9   VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLG 41


>BC000338-1|AAH00338.1|  326|Homo sapiens PSMD7 protein protein.
          Length = 326

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +2

Query: 92  LLGTSDKGVVEVTNCFCVPHKEHA--DQVE-AELNYAMDVYELNRRVNSSESIVGWW 253
           LLG+  K V++V+N F VP  E    D V   + +Y  ++Y + ++VN+ E IVGW+
Sbjct: 39  LLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWY 95



 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGHLIG 99
           V VHP+VL  +VD + R  +  +  RV+G L+G
Sbjct: 9   VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLG 41


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,370,374
Number of Sequences: 237096
Number of extensions: 1586511
Number of successful extensions: 2514
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -