Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30526.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    46   1e-05
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    29   1.9  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    29   2.5  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        29   2.5  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    29   2.5  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    29   2.5  
Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    27   5.7  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +2

Query: 89  TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           TL+G  +KG ++VTNCF +P  E  D +E +  +   +    ++ + +E  VGW+
Sbjct: 40  TLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWF 94


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 TASACHTKNMPIKSKRNLITRWMFTS 209
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGHLIG 99
           V VHP+VL  +VD + R  +     RV+G L+G
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLG 73


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 644


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646


>Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical
           protein C47E12.6b protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 32  FKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYEL 211
           F+L T   +      +  A L   +D G  E+ +CF V  +E  D +E  L     VY +
Sbjct: 597 FRLNTVARLHFDYKLQGDANLFICNDSGTKELESCFKVEGREGNDYIEL-LASDTKVYII 655

Query: 212 NRRVNSSES 238
           +R   S +S
Sbjct: 656 SRLSESGKS 664


>Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical
           protein C47E12.6a protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 32  FKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYEL 211
           F+L T   +      +  A L   +D G  E+ +CF V  +E  D +E  L     VY +
Sbjct: 652 FRLNTVARLHFDYKLQGDANLFICNDSGTKELESCFKVEGREGNDYIEL-LASDTKVYII 710

Query: 212 NRRVNSSES 238
           +R   S +S
Sbjct: 711 SRLSESGKS 719


>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 RLDRHVLCVARRSSWLLPPLLCRSCP 96
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 RLDRHVLCVARRSSWLLPPLLCRSCP 96
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 107 DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 208
           D G  EV   +   H EH    +  + Y++DV E
Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,584
Number of Sequences: 27780
Number of extensions: 242739
Number of successful extensions: 528
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)