Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30526.Seq
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.0
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 23 2.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.4
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 9.4
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.8 bits (49), Expect = 1.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 369 FTCIXXXTIGSAKWKARLXVHSCRCHSHM 455
+ CI +GSA+ ARL V+ HM
Sbjct: 469 YKCIAASKVGSAEHSARLNVYGLPFIRHM 497
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 22.6 bits (46), Expect = 2.3
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +2
Query: 185 NYAMDVYELNRRVNSSES-------IVGWWGLAMK*PTTPLLYTSIIPXNAVSLSMLLXT 343
NY DVY+ N V+S E + W L + T L+ +I+ N + ++ ++ T
Sbjct: 7 NYYGDVYQWNHTVSSGERDTRTEYYLPNWTDLVLAGLFTMLIIVTIV-GNTLVIAAVITT 65
Query: 344 LRWLEVEWVYV 376
R V +V
Sbjct: 66 RRLRSVTNCFV 76
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 98 NQILTTNAWLKLEWV 112
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLXTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 98 NQILTTNAWLKLEWV 112
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.6 bits (41), Expect = 9.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 326 SMLLXTLRWLEVEW 367
+ LL T WL++EW
Sbjct: 67 NQLLITNLWLKLEW 80
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 20.6 bits (41), Expect = 9.4
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -3
Query: 290 ITEEWLVTSLPVPTNQQYF 234
++ EW + +P N++Y+
Sbjct: 211 LSVEWDILEVPASRNEEYY 229
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,408
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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