Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30526.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 57 6e-09
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 48 5e-06
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 47 6e-06
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 47 8e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.75
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.75
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 28 3.0
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 3.0
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 3.0
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 3.0
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 28 4.0
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 27 9.3
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 57.2 bits (132), Expect = 6e-09
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSG 180
++ ++HP+V+F + D + RR + RVIG L+G G + A S +
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILP-DGTVDIRNSYAVPHNESSDQVA 84
Query: 181 T*L--RDGCLRAEQKSQFL*KYCWLVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLA 354
+ L + K TG V SS+IH++Y+R P+H+T+DT
Sbjct: 85 VDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFT 144
Query: 355 GGRMGLRAYXXXPLGVPNGKXGCXXTPVDVTLTCYEPEIVGLQV 486
G ++A+ L + + + + V L + E VG V
Sbjct: 145 NGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDV 188
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 TLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWW 253
TLLG+ G V++ N + VPH E +DQV +++Y ++ + +VNS E+IVGW+
Sbjct: 55 TLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWY 110
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 92 LLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNSSESIVGWWGLA 262
LLG+S +GVV+VTN + VP +E + NY ++ + +R+N+ E +VGW+
Sbjct: 46 LLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTG 105
Query: 263 MK 268
K
Sbjct: 106 PK 107
Score = 33.5 bits (73), Expect = 0.081
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGHLIG 99
V VHP+VL IVD Y R D S RV+G L+G
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLG 48
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 47.2 bits (107), Expect = 6e-06
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 92 LLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNSSESIVGWWGLA 262
LLG+S +G V+VTN + VP +E + NY ++ + +R+N+ E IVGW+
Sbjct: 46 LLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTG 105
Query: 263 MK 268
K
Sbjct: 106 PK 107
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGHLIG 99
V VHP+VL IVD Y R D S RV+G L+G
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLG 48
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 46.8 bits (106), Expect = 8e-06
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 TELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGW 250
T ++ LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW
Sbjct: 45 TLVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGW 104
Query: 251 W 253
+
Sbjct: 105 Y 105
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.75
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 119
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.75
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 119
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 281 PLLYTSIIPXNAVSLSMLLXTLRWLEVEWVYV 376
P+L ++ NA+ L+ + TL+W V WV+V
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFV 365
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.3 bits (60), Expect = 3.0
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*---PTTPLL--YTSIIPXNAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++P NAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 3.0
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*---PTTPLL--YTSIIPXNAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++P NAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 3.0
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*---PTTPLL--YTSIIPXNAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++P NAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 87 PPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRW 197
PP+W T+ WW A+A P + +L W
Sbjct: 217 PPWWPNGTELWWGEQGAAAFEHGPPPYRKPHDLRKAW 253
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVW 146
D++V L+ IH+ I F F ++FVW
Sbjct: 312 DAAVILMLIHQFITFGFACTPLYFVW 337
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,180,293
Number of Sequences: 28952
Number of extensions: 225946
Number of successful extensions: 501
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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