Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30523.Seq
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 46 4e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 46 4e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_42367| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32) 28 7.0
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) 28 9.2
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 28 9.2
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 28 9.2
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Frame = +1
Query: 403 HTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICTELSS---------APSLRRRGVAS 555
H + P +A P ++S+ G ++G + + T S PS R +
Sbjct: 1637 HPSMLMPHPLAMPGLMMSMSSGMISGSNTSTTTTATSSRSRDPDSSPYRTPSDRSSPLTV 1696
Query: 556 GARSLQPSRPPRRASGDTRPPARA 627
G RS +P PPR R P R+
Sbjct: 1697 GGRSSRPRSPPRLMEPRPRSPVRS 1720
>SB_42367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 698 GEKDRPGEXCAVLSERTRRQHIVRARAGGRVSPDAR 591
GE + GE +LS+ R H R + GR PD R
Sbjct: 40 GELNEEGEEGEILSDEETRDHQTRCGSRGREDPDVR 75
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
+++ + L G + RP + + LGAA +AG A VW
Sbjct: 21 MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56
>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1576
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +1
Query: 472 MTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARALTIC*RRV 651
+ GIP+ + + + AP + G+ A+ + P PP R A T+ +
Sbjct: 227 LAGIPTHNTPTFKQAAKAPLINTLGINPQAKGIIPGHPPNMGPASGR-TAGMTTVAPKAQ 285
Query: 652 LSLKTAHXSPG 684
+ A+ SPG
Sbjct: 286 VDNHPANISPG 296
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 363 QECIGRW--AGYCRGPHTHCATC 425
QEC+GRW A + RG H C C
Sbjct: 26 QECLGRWNVAQFFRGRHPTCPHC 48
>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
Length = 504
Score = 28.3 bits (60), Expect = 7.0
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +1
Query: 409 RIARPATMAAPRAVLSIMRGRMTGIPSKSACICTELSSAP-SLRRRGVASGARSLQ-PSR 582
R ARP + R R + PS S+ E +L +R RS Q +R
Sbjct: 395 RTARPPPRSNQRTARPPPRSKSENRPSSSSLAVREPPVLLLALSQRTARPPPRSNQRTAR 454
Query: 583 PPRRASGDTRPPARALTIC*RRVLSLKTAHXS---PGRSFSPN 702
PP R+ + RP + +L + VL L + + P RS S N
Sbjct: 455 PPPRSKSENRPSSSSLAVREPPVLLLALSQRTARPPPRSKSEN 497
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 508 TELSSAPSLRRRGVASGARSLQPSRPP 588
T L++ PS R+ G +S A++ +PS PP
Sbjct: 3156 TVLTTLPSSRQAGTSSTAKATRPSVPP 3182
>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 606 HTASSAGPDNMLTSSPFAQNRTSLPWAVFFSQYGE 710
HT SS+ P + T TSLP A F Q+ E
Sbjct: 181 HTRSSSYPGKITTGISHDSTATSLPKAPFLEQFSE 215
>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
Length = 538
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 543 SPTEGWRRTQFCADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHD 394
SP G+R T F G T + +S H + S G RNACV+ D
Sbjct: 484 SPYLGFRSTSF-TPLG--TAFAYMASVHTRRTSSRGNRLNMRRNACVSQD 530
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 517 SSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARA 627
+S+ + RRR +A ARSL S P R G P R+
Sbjct: 632 ASSRAQRRRSLAHSARSLPGSMPSDRDLGRKNPQGRS 668
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 502 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
CR + +Q VP+ + Q WG + + +C +Q R H +LL + +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,986,616
Number of Sequences: 59808
Number of extensions: 553790
Number of successful extensions: 1472
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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