Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30523.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   2.6  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   2.6  
U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   8.1  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -3

Query: 617 GGRVSPDARRGGRDGCRLRAP--EATPRR---RRD 528
           GG  SP ARRGG  G R R+P    +PRR   RRD
Sbjct: 196 GGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRD 230



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 535 RRRGVASGARSLQPSRPPRRASGDTRPPA 621
           RRR  +S +RS  P  PPRR   D+   A
Sbjct: 502 RRRSPSSSSRSRSPPPPPRRPRQDSEQQA 530


>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
           protein C05D12.3c protein.
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
           +GG   NS  C+C       +  +    K Q WG P     +CVC P  Y  +  I  CR
Sbjct: 25  NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79


>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
           protein C05D12.3a protein.
          Length = 1039

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
           +GG   NS  C+C       +  +    K Q WG P     +CVC P  Y  +  I  CR
Sbjct: 25  NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = -3

Query: 695 EKDRPGEXCAVLSERTRRQHIVRARAG-GRVSPDARRGGRDGC-RLRAPEATPRRRRDGA 522
           +KDR  +  +   +R RR    R+R+   R     RR  R    R R+     RRRR+ +
Sbjct: 77  KKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERS 136

Query: 521 ELSSVQMQADLLGIPVIRPLMMESTALGAAIVAG 420
             S V      +  PVI PL+ E   L AA+ +G
Sbjct: 137 PPSMVPNSPQRVKEPVINPLIRED--LAAAVESG 168


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = -3

Query: 695 EKDRPGEXCAVLSERTRRQHIVRARAG-GRVSPDARRGGRDGC-RLRAPEATPRRRRDGA 522
           +KDR  +  +   +R RR    R+R+   R     RR  R    R R+     RRRR+ +
Sbjct: 77  KKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERS 136

Query: 521 ELSSVQMQADLLGIPVIRPLMMESTALGAAIVAG 420
             S V      +  PVI PL+ E   L AA+ +G
Sbjct: 137 PPSMVPNSPQRVKEPVINPLIRED--LAAAVESG 168


>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 506 QMQADLLGIPVIRPLMMESTALGAAIVAG 420
           ++QAD++G  ++ P + E +  GAA+  G
Sbjct: 425 EIQADIMGRDIVTPKITEISGWGAAVAGG 453


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 487 SKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 624
           S S+   +  S + S   R  +S +     SR PRR   DTRPPAR
Sbjct: 17  SSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRR--DTRPPAR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,812
Number of Sequences: 27780
Number of extensions: 400089
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)