Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30521.Seq
(449 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205; Euka... 212 3e-54
UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a pro... 196 2e-49
UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14; Mag... 186 2e-46
UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155... 179 3e-44
UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a pro... 177 9e-44
UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal ... 163 2e-39
UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5; Magn... 117 1e-25
UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1; Enceph... 106 3e-22
UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24; Archae... 103 2e-21
UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14; Euryar... 101 1e-20
UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12; Archae... 99 4e-20
UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4; Euryarc... 94 1e-18
UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3; Euryarc... 92 4e-18
UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum l... 85 5e-16
UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3; Thermop... 84 2e-15
UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcu... 53 4e-13
UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1; Nanoarc... 68 8e-11
UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa... 38 0.076
UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal ... 38 0.10
UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia j... 37 0.23
UniRef50_UPI000049945C Cluster: hypothetical protein 90.t00021; ... 36 0.41
UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8; n... 34 1.2
UniRef50_A7PGU8 Cluster: Chromosome chr17 scaffold_16, whole gen... 34 1.6
UniRef50_A2WMK5 Cluster: Putative uncharacterized protein; n=2; ... 33 2.9
UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2; Sphingob... 33 2.9
UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular... 33 3.8
UniRef50_Q81VR6 Cluster: 30S ribosomal protein S8; n=96; cellula... 32 5.0
UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellula... 32 6.6
UniRef50_O67566 Cluster: 30S ribosomal protein S8; n=2; Aquifex|... 32 6.6
UniRef50_Q2GL45 Cluster: 30S ribosomal protein S8; n=8; Ricketts... 32 6.6
UniRef50_A6GH34 Cluster: Rieske (2Fe-2S) region; n=1; Plesiocyst... 31 8.8
UniRef50_Q2YIA3 Cluster: Ribosomal protein S8; n=20; Halimeda|Re... 31 8.8
UniRef50_Q7NEG6 Cluster: 30S ribosomal protein S8; n=165; Bacter... 31 8.8
UniRef50_P59031 Cluster: 30S ribosomal protein S8; n=8; Chlorobi... 31 8.8
>UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205;
Eukaryota|Rep: 40S ribosomal protein S15a - Homo sapiens
(Human)
Length = 130
Score = 212 bits (518), Expect = 3e-54
Identities = 104/130 (80%), Positives = 112/130 (86%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKV V+FLTVMMK DHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVVNLTGRLNKCGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARRKH
Sbjct: 61 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 58 LGGKILGFFF 29
GGKILGFFF
Sbjct: 121 TGGKILGFFF 130
>UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a
protein; n=5; Amniota|Rep: PREDICTED: similar to Rps15a
protein - Mus musculus
Length = 253
Score = 196 bits (478), Expect = 2e-49
Identities = 98/130 (75%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKV V FLTVMMK DHR GK
Sbjct: 124 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVWFLTVMMKHGYTGEFEIIDDHRDGK 183
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVVNLTGRLNKCGVIS RFDV + D+++W NLLP RQFG++VLTT GI+DHEEARRKH
Sbjct: 184 IVVNLTGRLNKCGVISLRFDVQLKDLDKWQNNLLPLRQFGFIVLTTLAGIIDHEEARRKH 243
Query: 58 LGGKILGFFF 29
GGKILGFFF
Sbjct: 244 TGGKILGFFF 253
>UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14;
Magnoliophyta|Rep: 40S ribosomal protein S15a-4 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 130
Score = 186 bits (453), Expect = 2e-46
Identities = 90/130 (69%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+D LKS++NAEKRGKRQV+IRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155;
n=33; Eukaryota|Rep: Uncharacterized protein
ENSP00000348155 - Homo sapiens (Human)
Length = 129
Score = 179 bits (435), Expect = 3e-44
Identities = 89/130 (68%), Positives = 103/130 (79%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR NVL+DALK I+NA+KRGKRQVL+RPCS+V ++FLTVM K DHRAGK
Sbjct: 1 MVRTNVLADALKRINNAKKRGKRQVLLRPCSEVIIRFLTVM-KHGYIGEFEITDDHRAGK 59
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
+VV LT RLNKCGVISPRF V + D+E+W NLLPS QFG+++LTTS GI D EEARRKH
Sbjct: 60 MVVYLTDRLNKCGVISPRFHVQLKDLEKWQNNLLPSYQFGFIILTTSAGITDREEARRKH 119
Query: 58 LGGKILGFFF 29
GGKILGFFF
Sbjct: 120 TGGKILGFFF 129
>UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a
protein; n=3; Mus musculus|Rep: PREDICTED: similar to
Rps15a protein - Mus musculus
Length = 239
Score = 177 bits (431), Expect = 9e-44
Identities = 88/131 (67%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = -2
Query: 421 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRA 242
+ MV MNVL DALKS ++AEK GKRQ IR CSK V+FLTVMMK DHRA
Sbjct: 97 VTMVEMNVLVDALKSTNSAEKGGKRQFPIRLCSKAIVRFLTVMMKHGYISEFEIIDDHRA 156
Query: 241 GKIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 65
GK+VVNLTGRLNKCGVISPRFDV + D+E+W NLLP+RQFG++VLTT GIMD EE R+
Sbjct: 157 GKMVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPARQFGFIVLTTLAGIMDREEGRQ 216
Query: 64 KHLGGKILGFF 32
KH GG+ILGFF
Sbjct: 217 KHTGGEILGFF 227
>UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Macaca mulatta|Rep: PREDICTED:
similar to ribosomal protein S15a - Macaca mulatta
Length = 345
Score = 163 bits (395), Expect = 2e-39
Identities = 82/117 (70%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Frame = -2
Query: 394 SDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNLTG 215
SDALKSI+NAEKRGKRQVLIR CSKV V+FL+VMMK DH AGKIVVNLTG
Sbjct: 174 SDALKSINNAEKRGKRQVLIRLCSKVIVRFLSVMMKHGYIGEFEIIDDHTAGKIVVNLTG 233
Query: 214 RLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 47
RLNKCGVI+ RFDV D+E+W NL PS QFG++VLTTS GIMDHEEAR+KH G +
Sbjct: 234 RLNKCGVINTRFDVQPKDLEKWRNNLFPSCQFGFIVLTTSAGIMDHEEARQKHTGSR 290
>UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5;
Magnoliophyta|Rep: 40S ribosomal protein S15a-5 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 129
Score = 117 bits (282), Expect = 1e-25
Identities = 56/125 (44%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Frame = -2
Query: 400 VLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNL 221
+L+DAL++I NAE+RGK V ++P S V FL +M + + HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 220 TGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 44
GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124
Query: 43 LGFFF 29
LGFF+
Sbjct: 125 LGFFY 129
>UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S15A
- Encephalitozoon cuniculi
Length = 128
Score = 106 bits (254), Expect = 3e-22
Identities = 53/124 (42%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = -2
Query: 397 LSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNLT 218
L++ K+I+NA + GKRQ+L+R ++ FL M++ D R+GK +++L
Sbjct: 5 LANMCKAINNASRAGKRQLLLRFSTEEMRMFLLQMLRHGYISGFSYIHDKRSGKSIIDLN 64
Query: 217 GRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 41
GRLN+CG ISP + V + IE + T LLP+RQFG+++ TS GI+DH+E +++GGKIL
Sbjct: 65 GRLNRCGAISPNYIVKRDGIEDFRTRLLPARQFGHVLFNTSKGILDHKECLTENVGGKIL 124
Query: 40 GFFF 29
G+F+
Sbjct: 125 GYFY 128
>UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24;
Archaea|Rep: 30S ribosomal protein S8P - Pyrococcus
furiosus
Length = 130
Score = 103 bits (247), Expect = 2e-21
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
M ++ L++AL I N+E+ GKR+V I+P SK+ + L VM K D RAG
Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
V L GR+NK G I PRF V +++ E+W LP+ +FG L+++TS G+M H+EA K
Sbjct: 61 YRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKG 120
Query: 58 LGGKILGFFF 29
+GG+++ + +
Sbjct: 121 IGGRLIAYVY 130
>UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 130
Score = 101 bits (241), Expect = 1e-20
Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MV ++ L++AL +I NAE GK ++RP SK L VM D +AG
Sbjct: 1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGI 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 59
V L GR+NKCG I PR+ V ERW LP++ FG L+LTTS G+M EAR K
Sbjct: 61 YSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKK 120
Query: 58 LGGKILGFFF 29
+GG++L + +
Sbjct: 121 IGGQLLAYVY 130
>UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12;
Archaea|Rep: 30S ribosomal protein S8P - Sulfolobus
acidocaldarius
Length = 133
Score = 99.1 bits (236), Expect = 4e-20
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
M +N L++AL +++N E R +Q LI P SK+ + L VM K D RAGK
Sbjct: 1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWTN----LLPSRQFGYLVLTTSGGIMDHEEAR 68
I+V L GR+NKCG ISPR+ + N + R + LPS++ G ++++T G+M H +
Sbjct: 61 IIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGI 120
Query: 67 RKHLGGKILGFFF 29
R+ +GG LG+ +
Sbjct: 121 REKIGGVTLGYVY 133
>UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Picrophilus torridus
Length = 129
Score = 94.3 bits (224), Expect = 1e-18
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Frame = -2
Query: 397 LSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNLT 218
L+D + +I NA + GK +V+I P S + + L VM + + R GK V L+
Sbjct: 6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELS 65
Query: 217 GRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 41
+N CGVI PR V ++IER+ + LP++ FG ++LTT+ GIM H EAR+ +GGK+L
Sbjct: 66 DTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLL 125
Query: 40 GFFF 29
+ +
Sbjct: 126 AYVY 129
>UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Archaeoglobus fulgidus
Length = 129
Score = 92.3 bits (219), Expect = 4e-18
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Frame = -2
Query: 406 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVV 227
++ LS+A+ +I NAE G+++ I+P SK+ L VM + +HR GK +V
Sbjct: 3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIV 62
Query: 226 NLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGG 50
L+G +N CG I PRF + + E + LP+R FG L+++T+ G+M ++AR++ LGG
Sbjct: 63 ELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGG 122
Query: 49 KILGFFF 29
+L + +
Sbjct: 123 VLLAYVY 129
>UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S8 -
Halorubrum lacusprofundi ATCC 49239
Length = 147
Score = 85.4 bits (202), Expect = 5e-16
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = -2
Query: 421 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRA 242
L M + ++AL + NAE G + P S + L V+ D +A
Sbjct: 16 LIMTGNDPFTNALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKA 75
Query: 241 GKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARR 65
GK V L G +N+CG + PR+ ++ E+W LP+R +G L++TTS G+M H EAR
Sbjct: 76 GKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEARE 135
Query: 64 KHLGGKILGFFF 29
+ +GG+++ + +
Sbjct: 136 EGIGGQVIAYVY 147
>UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S8P -
Cenarchaeum symbiosum
Length = 130
Score = 83.8 bits (198), Expect = 2e-15
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
M N+L++ +++N E R + + P SK+ V+ L + K + D R GK
Sbjct: 1 MPATNILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 59
V+L ++ KCG ISPRF V + W LPS G LV+TT+ G+M H EA +
Sbjct: 61 FSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERG 120
Query: 58 LGGKILGFFF 29
+GG ++G+ +
Sbjct: 121 IGGFLIGYVY 130
>UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcus
tauri|Rep: Ribosomal protein S15 - Ostreococcus tauri
Length = 144
Score = 52.8 bits (121), Expect(2) = 4e-13
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = -2
Query: 421 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXR 272
++ V + + +S++NAEKRGKRQVL+RP SKV +KFL VM K R
Sbjct: 31 VSSVALTSIFHRAESMYNAEKRGKRQVLVRPVSKVVIKFLQVMQKHEWNR 80
Score = 43.2 bits (97), Expect(2) = 4e-13
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2
Query: 253 DHRAGKIVVNLTGRLNKCGVI 191
DHRAGKIVV L GR+NKCGVI
Sbjct: 117 DHRAGKIVVELNGRINKCGVI 137
>UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S8P -
Nanoarchaeum equitans
Length = 129
Score = 68.1 bits (159), Expect = 8e-11
Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -2
Query: 403 NVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIV-V 227
++++D L + N ++G+ + P S + +K + +M + + D GKI+ +
Sbjct: 4 DIVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNY-RLVDSSRGKIIEI 62
Query: 226 NLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGG 50
L+ N+ I PRF V +++E++ LP+ FG L+L+TS G++ + EA+ + +GG
Sbjct: 63 ELSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGG 122
Query: 49 KILGFFF 29
++ + +
Sbjct: 123 VLIAYVY 129
>UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa|Rep:
Os01g0153200 protein - Oryza sativa subsp. japonica
(Rice)
Length = 1139
Score = 38.3 bits (85), Expect = 0.076
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -2
Query: 253 DHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 158
DH++G+I++ GRLNK GVIS R DV + +
Sbjct: 914 DHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S15a - Rattus norvegicus
Length = 60
Score = 37.9 bits (84), Expect = 0.10
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = -2
Query: 307 FLTVMMKXRLXRRV*NRCDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 152
F+TV MK V N G+I V+L G LNK GVI FDV + D+E+
Sbjct: 3 FVTVKMKTGKFEIVDNE---GVGRITVSLMGSLNKYGVIGLGFDVQLGDLEK 51
>UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia
japonica|Rep: Ribosome protein S8 - Griffithsia japonica
(Red alga)
Length = 142
Score = 36.7 bits (81), Expect = 0.23
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -2
Query: 184 RFDVPINDIERWTNLLPSRQ--FGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 29
R VP + + R LP + G +L+T G+M EAR+K LGG+++G F
Sbjct: 89 RVSVPSHRVYRKITQLPLARAGLGTWILSTPNGVMHCTEARQKRLGGEVIGEVF 142
>UniRef50_UPI000049945C Cluster: hypothetical protein 90.t00021;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 90.t00021 - Entamoeba histolytica HM-1:IMSS
Length = 627
Score = 35.9 bits (79), Expect = 0.41
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 250 HRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTS 98
H G I ++L RLN+ GV+ + + +I + LL FGYL +T+S
Sbjct: 192 HEIGNIHISLLNRLNQIGVVIGIYSNMLEEIPEYVTLL--HHFGYLTITSS 240
>UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8;
n=118; Viridiplantae|Rep: Chloroplast 30S ribosomal
protein S8 - Arabidopsis thaliana (Mouse-ear cress)
Length = 134
Score = 34.3 bits (75), Expect = 1.2
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 29
G ++L+TS GIM EAR K +GG+IL + +
Sbjct: 104 GIVILSTSQGIMTDREARLKRIGGEILCYIW 134
>UniRef50_A7PGU8 Cluster: Chromosome chr17 scaffold_16, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_16, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 93
Score = 33.9 bits (74), Expect = 1.6
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKIL 41
G ++L+TS GIM EAR K +GG+IL
Sbjct: 2 GIVILSTSRGIMTDREARLKRIGGEIL 28
>UniRef50_A2WMK5 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 186
Score = 33.1 bits (72), Expect = 2.9
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = -2
Query: 220 TGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 41
T ++ C +++P D IN + + +L +GY+V+TT G++DHEE G +L
Sbjct: 134 TWQIYFCNMLAPSLD--INLMLYYLSL--HSVWGYVVITTPNGVLDHEE-------GPLL 182
Query: 40 GFF 32
G+F
Sbjct: 183 GYF 185
>UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2;
Sphingobacteriales|Rep: 30S ribosomal protein S8 -
Salinibacter ruber (strain DSM 13855)
Length = 133
Score = 33.1 bits (72), Expect = 2.9
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 29
G ++L+TS G+M +EARR +GG++L F
Sbjct: 103 GIVILSTSRGVMSDKEARRFGVGGEVLAKVF 133
>UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechocystis
sp. (strain PCC 6803)
Length = 133
Score = 32.7 bits (71), Expect = 3.8
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 29
G +++TS GIM EARR+ +GG+IL + +
Sbjct: 103 GIAIVSTSHGIMTDREARRQGIGGEILCYIW 133
>UniRef50_Q81VR6 Cluster: 30S ribosomal protein S8; n=96; cellular
organisms|Rep: 30S ribosomal protein S8 - Bacillus
anthracis
Length = 132
Score = 32.3 bits (70), Expect = 5.0
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MV + ++D L I NA + + L P SK+ + ++ + R V D++ G
Sbjct: 1 MVMTDPIADMLTRIRNANMV-RHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGI 59
Query: 235 IVVNLTGRLNKCGVIS--PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEAR 68
+ + L N VI+ R P + + +P G +++TS G+M ++AR
Sbjct: 60 LRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDAR 119
Query: 67 RKHLGGKILGF 35
+ GG+++ +
Sbjct: 120 QLQTGGEVVAY 130
>UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 136
Score = 31.9 bits (69), Expect = 6.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKIL 41
G +++TS GIM EAR++ +GG++L
Sbjct: 106 GIAIISTSNGIMTDREARKQGIGGEVL 132
>UniRef50_O67566 Cluster: 30S ribosomal protein S8; n=2;
Aquifex|Rep: 30S ribosomal protein S8 - Aquifex aeolicus
Length = 168
Score = 31.9 bits (69), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 130 RQFGYLVLTTSGGIMDHEEARRKHLGGKILGF 35
R G +++T G+M EARR GG+++ F
Sbjct: 135 RGLGIAIVSTDAGVMTDHEARRMRKGGEVIAF 166
>UniRef50_Q2GL45 Cluster: 30S ribosomal protein S8; n=8;
Rickettsiales|Rep: 30S ribosomal protein S8 - Anaplasma
phagocytophilum (strain HZ)
Length = 133
Score = 31.9 bits (69), Expect = 6.6
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Frame = -2
Query: 397 LSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAG-KIVVNL 221
++D L + N + G +V+ PCSKV + L ++++ +G K++
Sbjct: 7 IADFLTRLRNGQA-GMNKVVYVPCSKVVMAVLRILVEEGYIESFTEEVRGDSGIKVLKVF 65
Query: 220 TGRLNKCGVISP--RFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARRKHLG 53
N I R P + + +P G +++TS GIM AR +G
Sbjct: 66 LKYFNSAAAIRKIVRVSRPGKRVYSSADKMPRFYNALGIYIVSTSKGIMLDSHARNAGVG 125
Query: 52 GKIL 41
G+IL
Sbjct: 126 GEIL 129
>UniRef50_A6GH34 Cluster: Rieske (2Fe-2S) region; n=1; Plesiocystis
pacifica SIR-1|Rep: Rieske (2Fe-2S) region -
Plesiocystis pacifica SIR-1
Length = 578
Score = 31.5 bits (68), Expect = 8.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 247 RAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 146
R G I + G+ N+ G ++P FD+P + E WT
Sbjct: 125 RNGLIYIYYAGKGNEHGEVTPAFDIPELETEGWT 158
>UniRef50_Q2YIA3 Cluster: Ribosomal protein S8; n=20; Halimeda|Rep:
Ribosomal protein S8 - Halimeda opuntia
Length = 133
Score = 31.5 bits (68), Expect = 8.8
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MV + +SD I NA G V + P + L +++ + ++ ++R
Sbjct: 2 MVFNDSISDVFTRIRNANLVGHNTVRV-PLTLTTKSILNILVHHGFIKNF-SQINNREFL 59
Query: 235 IVVNLTGRLNKCGVIS-PRFDVPINDIERWTNLLPSRQFGY-----LVLTTSGGIMDHEE 74
+ + L K +S P + ++ + +L S Q G + L+TS GI+ E
Sbjct: 60 VTLKSKSVLRKLKRLSRPGCRLYVS-AQNLPQILRSGQLGLAPRAIIFLSTSKGILSDRE 118
Query: 73 ARRKHLGGKILGF 35
AR +GG+ILG+
Sbjct: 119 ARHLKVGGEILGY 131
>UniRef50_Q7NEG6 Cluster: 30S ribosomal protein S8; n=165;
Bacteria|Rep: 30S ribosomal protein S8 - Gloeobacter
violaceus
Length = 133
Score = 31.5 bits (68), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 29
G +++TS G+M +ARR +GG++L + F
Sbjct: 103 GIAIISTSQGVMTDRDARRAGVGGEVLCYVF 133
>UniRef50_P59031 Cluster: 30S ribosomal protein S8; n=8;
Chlorobiaceae|Rep: 30S ribosomal protein S8 - Chlorobium
tepidum
Length = 131
Score = 31.5 bits (68), Expect = 8.8
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -2
Query: 121 GYLVLTTSGGIMDHEEARRKHLGGKIL 41
G +L+TS GI+ +EAR +++GG++L
Sbjct: 101 GLFILSTSKGILTDKEAREQNVGGEVL 127
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,054,923
Number of Sequences: 1657284
Number of extensions: 6616662
Number of successful extensions: 13496
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 13245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13467
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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