Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30521.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 189 1e-48
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 177 3e-45
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 111 2e-25
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 38 0.003
06_01_0601 + 4337575-4340149,4340566-4340978 29 1.7
11_01_0526 - 4140853-4141017,4141416-4141619 28 3.0
11_01_0482 - 3714442-3715593 28 4.0
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 7.0
07_01_0802 - 6287180-6287605 27 9.2
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 189 bits (460), Expect = 1e-48
Identities = 92/130 (70%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+DALK+++NAEKRGKRQVLIRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 177 bits (431), Expect = 3e-45
Identities = 88/126 (69%), Positives = 102/126 (80%), Gaps = 1/126 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+DALK+++NAEKRGKRQV+IRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKIL 41
+GGK L
Sbjct: 121 VGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 111 bits (267), Expect = 2e-25
Identities = 52/124 (41%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Frame = -2
Query: 400 VLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNL 221
+L+DAL+++ NAE+RGK L++P S V V FL +M ++ HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 220 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 44
GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Query: 43 LGFF 32
LG+F
Sbjct: 125 LGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -2
Query: 253 DHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 158
DH++G+I++ GRLNK GVIS R DV + +
Sbjct: 914 DHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 259 RCDHRAGKIVVNLTGRLNKCGVISP 185
RCD+R+G++ L N GVISP
Sbjct: 62 RCDNRSGRVTGLLLSNSNLAGVISP 86
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 241 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 146
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>11_01_0482 - 3714442-3715593
Length = 383
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 313 VKFLTVMMKXRLXRRV*NRCDHRAGKIVVNL-TGRLNKCGVISP-RFDVPINDIERWT 146
+KF+ + + RR +CDH G V++ T R++ G +S D I+ E W+
Sbjct: 323 LKFVDIFPRCCCGRRGATQCDHSGGAFVIHTWTMRMDNDGDMSSWTMDAMIDATELWS 380
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 241 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 146
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 9.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 248 QSWQDCCKSHRQTKQVWC 195
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,534,675
Number of Sequences: 37544
Number of extensions: 187801
Number of successful extensions: 360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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