Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30521.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   199   9e-52
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   8.3  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   8.3  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  199 bits (485), Expect = 9e-52
 Identities = 99/130 (76%), Positives = 110/130 (84%), Gaps = 1/130 (0%)
 Frame = -2

Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKV V+FLTVMMK           DHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 59
           IVVNLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120

Query: 58  LGGKILGFFF 29
           LGGKILGFFF
Sbjct: 121 LGGKILGFFF 130


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -1

Query: 131 TTVWL-PSPYNKWW 93
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = -2

Query: 337 IRPCSKVXV----KFLTVMMKXRLXRRV*N--RCDHRAGKIVVNLTGRLNKCGVISPRFD 176
           +R C K+      K+ T M+   + RR  N    ++   KI+  L+ R N    I   FD
Sbjct: 122 VRACKKIVYIVEDKYKTTMVLPAIGRRSYNFRSYNYYMNKIMFGLSQRANNTSSIIENFD 181

Query: 175 VPINDIERWTNLLPSRQFGYL 113
           + +  I  +      + FG L
Sbjct: 182 IKLYSITNFEESGFGQNFGLL 202


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 56  KVFSSGFFMVHDATTCCK 109
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 56  KVFSSGFFMVHDATTCCK 109
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,332
Number of Sequences: 27780
Number of extensions: 159512
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)