Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30521.Seq
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 189 7e-49
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 189 7e-49
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 189 7e-49
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 186 6e-48
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 181 2e-46
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 118 2e-27
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 117 3e-27
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 4.4
At3g21720.1 68416.m02740 isocitrate lyase, putative similar to i... 27 7.7
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 189 bits (461), Expect = 7e-49
Identities = 92/130 (70%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+DALKS++NAEKRGKRQV+IRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 189 bits (461), Expect = 7e-49
Identities = 92/130 (70%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+DALKS++NAEKRGKRQV+IRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 189 bits (461), Expect = 7e-49
Identities = 92/130 (70%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+DALKS++NAEKRGKRQV+IRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 186 bits (453), Expect = 6e-48
Identities = 90/130 (69%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR++VL+D LKS++NAEKRGKRQV+IRP SKV +KFL VM K DHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 181 bits (441), Expect = 2e-46
Identities = 87/130 (66%), Positives = 104/130 (80%), Gaps = 1/130 (0%)
Frame = -2
Query: 415 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGK 236
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKV +KFLTVM K DHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 235 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 59
IVV L GRLN CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K+
Sbjct: 67 IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126
Query: 58 LGGKILGFFF 29
+GGK+LGFF+
Sbjct: 127 VGGKVLGFFY 136
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 118 bits (284), Expect = 2e-27
Identities = 57/124 (45%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = -2
Query: 400 VLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNL 221
+L+DAL++I NAEKRGK V ++P S V FL +M + + HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 220 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 44
GR+N C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQV 124
Query: 43 LGFF 32
LGFF
Sbjct: 125 LGFF 128
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 117 bits (282), Expect = 3e-27
Identities = 56/125 (44%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Frame = -2
Query: 400 VLSDALKSIHNAEKRGKRQVLIRPCSKVXVKFLTVMMKXRLXRRV*NRCDHRAGKIVVNL 221
+L+DAL++I NAE+RGK V ++P S V FL +M + + HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 220 TGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 44
GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124
Query: 43 LGFFF 29
LGFF+
Sbjct: 125 LGFFY 129
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 262 NRCDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVL 107
N DHRAG+ V + RL+ + P + IN + + L FGY +L
Sbjct: 1374 NNTDHRAGEEAVVKSKRLDDGSLKVPPLPININVKPKSSLQLAVSTFGYQIL 1425
>At3g21720.1 68416.m02740 isocitrate lyase, putative similar to
isocitrate lyase GI:167144 from [Brassica napus]
Length = 576
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 259 RCDHRAGKIVVNLTGRLNKCGVISPRFDV 173
+C H AGK++V ++ +N+ +FDV
Sbjct: 212 KCGHMAGKVLVAVSEHINRLVAARLQFDV 240
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,574,403
Number of Sequences: 28952
Number of extensions: 153164
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -