Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30520.Seq
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 114 3e-26
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 113 5e-26
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 72 2e-13
11_01_0526 - 4140853-4141017,4141416-4141619 28 4.2
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 27 7.3
01_06_1354 - 36599904-36600643,36600851-36601352 27 9.6
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 114 bits (275), Expect = 3e-26
Identities = 53/67 (79%), Positives = 61/67 (91%)
Frame = +1
Query: 52 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 232 IVVNLTG 252
IVV L G
Sbjct: 61 IVVELNG 67
Score = 110 bits (264), Expect = 6e-25
Identities = 49/63 (77%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Frame = +3
Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
+LNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LG
Sbjct: 68 RLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127
Query: 429 FFF 437
FF+
Sbjct: 128 FFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 113 bits (273), Expect = 5e-26
Identities = 52/67 (77%), Positives = 61/67 (91%)
Frame = +1
Query: 52 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 232 IVVNLTG 252
IVV L G
Sbjct: 61 IVVELNG 67
Score = 99.5 bits (237), Expect = 1e-21
Identities = 46/59 (77%), Positives = 52/59 (88%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 425
+LNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 68 RLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +1
Query: 67 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 246
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 247 TG 252
G
Sbjct: 65 HG 66
Score = 66.9 bits (156), Expect = 7e-12
Identities = 26/64 (40%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = +3
Query: 246 HRQLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 422
H ++ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Query: 423 LGFF 434
LG+F
Sbjct: 125 LGYF 128
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 255 LNKCGVISPRFDVPINDIERWT 320
LNKCGVI+P I+D+ T
Sbjct: 88 LNKCGVIAPNLPTKIDDLSHRT 109
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 219 QSWQDCCKSHRQLNKCGVISPRFDVPINDIERWTNLLPSRQF 344
Q W C+ + ++K + P D+P+ND + LP F
Sbjct: 518 QQWDALCRKY-VVHKNDTLEPSIDMPLNDADDVNEPLPEDIF 558
>01_06_1354 - 36599904-36600643,36600851-36601352
Length = 413
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 234 CCKSHRQLNKCGVISPRFD 290
CC SH QL K ++ P F+
Sbjct: 352 CCSSHGQLRKNSLLGPEFN 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,044
Number of Sequences: 37544
Number of extensions: 214569
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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