Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30520.Seq
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             76   2e-14
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   9e-07
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                27   7.5  
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   7.5  
SB_35862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    27   9.9  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +1

Query: 52  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 183
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +3

Query: 264 CGVISPRFDVPINDIERW-TNLLPSRQF 344
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 85  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 210
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 174  DEARLHRRV*NR**SQSWQDCCKSHRQLNKCGVIS 278
            DE  +H+R  +R   Q W D C+S     + G+ S
Sbjct: 974  DERDVHKRAESRQSLQCWADECRSQHSHRRLGIAS 1008


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 273 ISPRFDVPINDIERWTNLLPSRQFGYL 353
           ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFL 407


>SB_35862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 382 SMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMT 269
           S + PL++ TR PN RE  R+V   + + G+   G +T
Sbjct: 277 SALDPLILATRLPNIREAVRIV---LGIRGSRVGGAIT 311


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 231 DCCKSHRQLNKCGVISPRF 287
           D C +H+QL+ CG +  RF
Sbjct: 274 DSCLAHKQLDMCGCLEYRF 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,922
Number of Sequences: 59808
Number of extensions: 250827
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)