Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30520.Seq
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 128 2e-30
U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical pr... 30 0.93
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.0
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr... 27 5.0
U41268-4|AAL02521.1| 168|Caenorhabditis elegans Forkhead transc... 27 6.6
U41268-3|AAA82436.1| 270|Caenorhabditis elegans Forkhead transc... 27 6.6
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 8.7
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 8.7
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 128 bits (309), Expect = 2e-30
Identities = 61/67 (91%), Positives = 65/67 (97%)
Frame = +1
Query: 52 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60
Query: 232 IVVNLTG 252
IVVNLTG
Sbjct: 61 IVVNLTG 67
Score = 108 bits (259), Expect = 2e-24
Identities = 49/63 (77%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Frame = +3
Query: 252 QLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
+LNK VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILG
Sbjct: 68 RLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILG 127
Query: 429 FFF 437
FFF
Sbjct: 128 FFF 130
>U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical
protein F22A3.2 protein.
Length = 145
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 258 LAACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 121
LAA E ++ + + F+ +V V + ++DDFG+ PD+DL
Sbjct: 17 LAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
F37A4.4 protein.
Length = 1163
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 64 NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 237
NVL D+++ I+ N K KR I C+K L V + GY EI+ H A +
Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885
Query: 238 VN 243
+N
Sbjct: 886 LN 887
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 335 TTVWL-PSPYNKWW 373
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical protein
F09F7.3 protein.
Length = 1154
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 246 HRQLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMD 383
H Q CG+I+ + D+P ND+ +++ GY T G +M+
Sbjct: 922 HGQKGVCGLIAQQEDMPFNDLGMVPDMI-MNPHGYPSRMTVGKLME 966
>U41268-4|AAL02521.1| 168|Caenorhabditis elegans Forkhead
transcription factor familyprotein 2, isoform b protein.
Length = 168
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 219 QSWQDCCKSHRQLNKCGVISPR-FDVP 296
Q WQ+ + + LNKC V PR FD P
Sbjct: 33 QGWQNSIRHNLSLNKCFVKVPRNFDDP 59
>U41268-3|AAA82436.1| 270|Caenorhabditis elegans Forkhead
transcription factor familyprotein 2, isoform a protein.
Length = 270
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 219 QSWQDCCKSHRQLNKCGVISPR-FDVP 296
Q WQ+ + + LNKC V PR FD P
Sbjct: 135 QGWQNSIRHNLSLNKCFVKVPRNFDDP 161
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 410 KVFSSGFFMVHDATTCCK 357
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 410 KVFSSGFFMVHDATTCCK 357
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,841
Number of Sequences: 27780
Number of extensions: 183493
Number of successful extensions: 381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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