Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30520.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   114   2e-26
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   114   2e-26
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   114   2e-26
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   113   7e-26
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         109   9e-25
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    71   4e-13
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          70   9e-13
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.5  
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    29   2.0  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  114 bits (275), Expect = 2e-26
 Identities = 53/67 (79%), Positives = 61/67 (91%)
 Frame = +1

Query: 52  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 232 IVVNLTG 252
           IVV L G
Sbjct: 61  IVVELNG 67



 Score =  109 bits (263), Expect = 7e-25
 Identities = 49/63 (77%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           +LNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LG
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

Query: 429 FFF 437
           FF+
Sbjct: 128 FFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  114 bits (275), Expect = 2e-26
 Identities = 53/67 (79%), Positives = 61/67 (91%)
 Frame = +1

Query: 52  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 232 IVVNLTG 252
           IVV L G
Sbjct: 61  IVVELNG 67



 Score =  109 bits (263), Expect = 7e-25
 Identities = 49/63 (77%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           +LNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LG
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

Query: 429 FFF 437
           FF+
Sbjct: 128 FFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  114 bits (275), Expect = 2e-26
 Identities = 53/67 (79%), Positives = 61/67 (91%)
 Frame = +1

Query: 52  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 232 IVVNLTG 252
           IVV L G
Sbjct: 61  IVVELNG 67



 Score =  109 bits (263), Expect = 7e-25
 Identities = 49/63 (77%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           +LNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LG
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLG 127

Query: 429 FFF 437
           FF+
Sbjct: 128 FFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  113 bits (271), Expect = 7e-26
 Identities = 52/67 (77%), Positives = 60/67 (89%)
 Frame = +1

Query: 52  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 232 IVVNLTG 252
           IVV L G
Sbjct: 61  IVVELNG 67



 Score =  108 bits (259), Expect = 2e-24
 Identities = 48/63 (76%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           +LNKCGVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LG
Sbjct: 68  RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLG 127

Query: 429 FFF 437
           FF+
Sbjct: 128 FFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  109 bits (262), Expect = 9e-25
 Identities = 51/67 (76%), Positives = 58/67 (86%)
 Frame = +1

Query: 52  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 231
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 232 IVVNLTG 252
           IVV L G
Sbjct: 67  IVVELNG 73



 Score =  104 bits (249), Expect = 3e-23
 Identities = 45/63 (71%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           +LN CGVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LG
Sbjct: 74  RLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLG 133

Query: 429 FFF 437
           FF+
Sbjct: 134 FFY 136


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 30/63 (47%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           ++N C  ++ R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LG
Sbjct: 67  RVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLG 126

Query: 429 FFF 437
           FF+
Sbjct: 127 FFY 129



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 30/62 (48%), Positives = 44/62 (70%)
 Frame = +1

Query: 67  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 246
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 247 TG 252
            G
Sbjct: 65  QG 66


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 69.7 bits (163), Expect = 9e-13
 Identities = 30/62 (48%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
 Frame = +3

Query: 252 QLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 428
           ++N C  ++ R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LG
Sbjct: 67  RVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLG 126

Query: 429 FF 434
           FF
Sbjct: 127 FF 128



 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/62 (50%), Positives = 44/62 (70%)
 Frame = +1

Query: 67  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 246
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 247 TG 252
            G
Sbjct: 65  QG 66


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 130 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 237
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           (Glycine max); contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 491

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 219 QSWQDC-CKSHRQLNKCGVISPRFDVPI 299
           Q W D  CK HR +NK  +++   D PI
Sbjct: 197 QKWWDLPCKPHRSVNKSAIVTGPCDSPI 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,143,496
Number of Sequences: 28952
Number of extensions: 174109
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)