Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30519.Seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    95   1e-20
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    95   1e-20
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    33   0.039
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    29   0.48 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   3.4  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.9  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 42/59 (71%), Positives = 50/59 (84%)
 Frame = +2

Query: 80  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++K
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKK 75



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSA-NPLRSFTW-WKY*VPCA 204
           MGI+RD  HKR ATG +   + ++ +  +       +  P   + +R      K+     
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 205 ASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 384
            SG+     G    + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY 
Sbjct: 61  DSGN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 385 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 507
           + +G  KG K T          +S+   RK+ AR   +KV+
Sbjct: 119 ILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVD 153



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = +3

Query: 510 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 647
           ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 42/59 (71%), Positives = 50/59 (84%)
 Frame = +2

Query: 80  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++K
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKK 75



 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSA-NPLRSFTW-WKY*VPCA 204
           MGI+RD  HKR ATG +   + ++ +  +       +  P   + +R      K+     
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 205 ASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 384
            SG+     G    + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY 
Sbjct: 61  DSGN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 385 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 507
           + +G  KG K T          +S+   RK+ AR   +KV+
Sbjct: 119 ILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVD 153



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = +3

Query: 510 ALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 647
           ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 624 DRTRVLCLLRCNHRRDHTDLGDSPRKPANALCGIALLEHL 505
           D   + CLLR  H+RD  +  +  RK  N L G  LLE +
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLEEM 473


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 59  SEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 208
           S+G    K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 35  SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 113  ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKP 259
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  KP
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKP 1156


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 368 YHCLNGVASTTTIAFLTRVFVRTNS 294
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
 Frame = -2

Query: 285 CIIHNINDTGLRVEHSDPQEKLPVS-RRSA---RYL-------VFPPRERTEWIR*GPSL 139
           C + ++NDT   +E S   + LP+  +R A   RY+       + P    TEW+    S+
Sbjct: 348 CFLIHLNDTNHNLEFSTTSQPLPLEWQRWAVDPRYIKLFGSNAILPNEWVTEWVE--QSI 405

Query: 138 VFAAGRPNSYFLFLRMGARFPAGGPSLMPVIP 43
             AAG     +   RM      G PSL   +P
Sbjct: 406 SVAAGIVAQMYTSKRMA----LGDPSLFAGLP 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,902
Number of Sequences: 5004
Number of extensions: 53371
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)