Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30518.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   120   3e-28
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   0.85 
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   0.85 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.5  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   6.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   6.0  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   7.9  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  120 bits (288), Expect = 3e-28
 Identities = 54/110 (49%), Positives = 76/110 (69%)
 Frame = +2

Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
           + +G+  ++TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
           P+ D+VEGLTG+LF+VYLKPYF+EAYRPI +   F+VRG MR VEFKVV+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVD 187



 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 38/65 (58%), Positives = 50/65 (76%)
 Frame = +3

Query: 63  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 242
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 243 GKRRR 257
           GKRR+
Sbjct: 81  GKRRK 85


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 431 QLNHQLAVCGLV---FHISLKDTERWI 360
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 431 QLNHQLAVCGLV---FHISLKDTERWI 360
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 88  LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 201
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 401 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 291
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 37  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 210
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 211 NS 216
            S
Sbjct: 343 RS 344


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 520 GPRGHARRRVQSGRKQIHHHFASWAPXTVIHCDG 621
           G  GH +RR Q+  K+ H  ++     T+I   G
Sbjct: 74  GSSGHTKRRSQTSGKKTHQPYSGPCVPTIIRWRG 107


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 147 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRR 257
           E+AV D+N+ ++L+  +  +    RGD  ++ G   R
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLER 283


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 87  PD-DLSTAILRRKDRPNRLIVEEAVSD 164
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 60  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 218
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 604 RYXEPTMQNGDGSVFDHFELDGAHAPADHERCVTMDRTVS 485
           R+   +  N D  VFDH E    H   D +  + +D+ VS
Sbjct: 102 RHYRDSKHNLDIQVFDHIEYVHIHWDHDTQFALELDKLVS 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,655
Number of Sequences: 5004
Number of extensions: 57174
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)