Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30518.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 148 5e-36
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 143 1e-34
08_02_0657 - 19749835-19751942,19753123-19753561 116 1e-26
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313... 28 6.2
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 6.2
01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898... 28 6.2
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 28 8.2
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 28 8.2
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 148 bits (358), Expect = 5e-36
Identities = 65/110 (59%), Positives = 83/110 (75%)
Frame = +2
Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
L +G+ ++T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + F+VRGGMR+VEFKV+E
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIE 174
Score = 84.2 bits (199), Expect = 9e-17
Identities = 39/62 (62%), Positives = 48/62 (77%)
Frame = +3
Query: 72 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 251
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 252 RR 257
R+
Sbjct: 71 RK 72
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 143 bits (347), Expect = 1e-34
Identities = 63/110 (57%), Positives = 82/110 (74%)
Frame = +2
Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
L +G+ ++T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + F+VRGGMR+VEFKV+E
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIE 174
Score = 87.8 bits (208), Expect = 7e-18
Identities = 43/62 (69%), Positives = 49/62 (79%)
Frame = +3
Query: 72 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 251
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 252 RR 257
R+
Sbjct: 71 RK 72
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 116 bits (280), Expect = 1e-26
Identities = 49/108 (45%), Positives = 73/108 (67%)
Frame = +2
Query: 239 QGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 418
+G+ +E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 419 DDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
DDSVEG++G+LFE YLKPYFM+A RP+ + F+VRG M AVEFKV++
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMD 177
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Frame = +3
Query: 93 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRR 257
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RRR
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 258 K 260
+
Sbjct: 76 E 76
>10_07_0117 +
13028336-13028404,13029073-13029174,13031108-13031367,
13031813-13031882,13031935-13031966,13032736-13032823,
13033431-13033742,13033822-13033896,13034018-13034559,
13034936-13035044,13035713-13035892,13036243-13036404
Length = 666
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 389 YGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRG 529
Y R+ + +D+ + + V L FM++Y PI P +VRG
Sbjct: 213 YSSRIAVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPLPLLVRG 259
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +1
Query: 490 PSDPS*HTFHGPRGHARRRVQSGRKQIHHHFASWAPXTVIH 612
P DP H H GH + ++Q HHH P H
Sbjct: 30 PHDPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPPPPPH 70
>01_06_0518 +
29988613-29989193,29989596-29989622,29989759-29989891,
29990006-29990240,29990524-29990566,29990672-29990952,
29991293-29991423,29991812-29991946
Length = 521
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 500 HRDTPFMVRGGMRAVEFKVVENRSITILHRGL 595
H++ PF+ RG RAV F + S+ + H L
Sbjct: 343 HQEQPFIQRGKARAVMFSKLFTSSVRMAHNSL 374
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 562 FDHFELDGAHAPADHERCVTMDRTVSLHEVRLQVYFE 452
F+ L+ DHE + D+ VSL +V++ Y+E
Sbjct: 401 FEFIPLEDGLRLTDHEEVIENDKLVSLVDVKVGCYYE 437
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 528 PRTMKGVS-RWIGR*A-SMKYGFKYTSNRLPVRPSTESSIGSMWTRFPYFTEG 376
PRT K RW+ + ++K G K+T+ V ++ G+ W R + +G
Sbjct: 64 PRTGKSCRLRWVNKLRPNLKSGCKFTAEEERVVIELQAQFGNKWARIATYLQG 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,194,899
Number of Sequences: 37544
Number of extensions: 407891
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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