Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30518.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         95   4e-20
SB_44806| Best HMM Match : Hist_deacetyl (HMM E-Value=0)               28   8.4  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 43/56 (76%), Positives = 53/56 (94%)
 Frame = +3

Query: 90  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRR 257
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+R+
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRK 60



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 361
           L +G+  ++TVCIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 561 KTDPSPFCIVGSXYRNTL*R*TD*NVKKKKEH*--NAVXYDDIXGCRK 698
           +TDPSP+CIV     +T+       VK+++E    N V YDDI GCRK
Sbjct: 121 ETDPSPYCIVAP---DTVIHCEGEPVKREEEEESLNEVGYDDIGGCRK 165



 Score = 34.3 bits (75), Expect = 0.096
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +2

Query: 515 FMVRGGMRAVEFKVVE 562
           F+VRGGMRAVEFKV+E
Sbjct: 106 FLVRGGMRAVEFKVIE 121



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 592 APXTVIHCDGEPIK 633
           AP TVIHC+GEP+K
Sbjct: 131 APDTVIHCEGEPVK 144


>SB_44806| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
          Length = 496

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 419 QLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCKRFPAAFAL 240
           Q  + G + ++SL D  R  P ++  H     + G     H+  Y L  RC + P+  A 
Sbjct: 197 QSGLAGELANLSLNDEVRPWPAKERNHSEVPDRIGRPYEKHK-EYGLLDRCYKIPSRHAT 255

Query: 239 EQD--CVTTE 216
           E+D  C+ +E
Sbjct: 256 EEDLLCLHSE 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,055,077
Number of Sequences: 59808
Number of extensions: 460575
Number of successful extensions: 1138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)