Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30518.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   139   2e-33
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   130   7e-31
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   130   7e-31
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    28   7.4  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.4  
AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  139 bits (336), Expect = 2e-33
 Identities = 59/110 (53%), Positives = 82/110 (74%)
 Frame = +2

Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
           + +G+  +E+V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
           PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+   F V+  MR VEFKVVE
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVE 173



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 39/63 (61%), Positives = 53/63 (84%)
 Frame = +3

Query: 81  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRRK 260
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+R++
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 261 PFA 269
             A
Sbjct: 73  SVA 75


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  130 bits (315), Expect = 7e-31
 Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
 Frame = +2

Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
           + +G+  +ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVENRSITILHRG 592
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+   F V+  MR VEFKVVE          
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPAC--- 179

Query: 593 LLIP*YTVTV--NRLKREEEEGAL 658
           ++ P   +    + +KREEEE AL
Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEAL 203



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 38/60 (63%), Positives = 53/60 (88%)
 Frame = +3

Query: 81  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRRK 260
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+RR+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  130 bits (315), Expect = 7e-31
 Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
 Frame = +2

Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
           + +G+  +ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVENRSITILHRG 592
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+   F V+  MR VEFKVVE          
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPAC--- 179

Query: 593 LLIP*YTVTV--NRLKREEEEGAL 658
           ++ P   +    + +KREEEE AL
Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEAL 203



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 38/60 (63%), Positives = 53/60 (88%)
 Frame = +3

Query: 81  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRRK 260
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+RR+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 95 IIRAFIICHFIQNLLLESKNYYNFY 21
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 60  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 209
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
            domain-containing protein2 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 618  VTVYYGXRSPRCKMVMDLFSTTLNSTARMPPRTMKGVSRWIGR*ASMKYGF 466
            +TV YG  +P CK        TL  +A+ P  T+    R IG  A  ++ F
Sbjct: 850  LTVDYGVTNPACKQFFLNSHMTLQGSAKTPLYTVLADDRNIGMSALEEFTF 900


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 60  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 209
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical
           protein F09G2.8b protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 290 NYRLRARCKRFPAAFALEQDCVTTEELKLLHF 195
           N+R + RC++ P+   LE   +   EL L HF
Sbjct: 7   NFRQQRRCRQSPSVARLESIVLNRRELLLDHF 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,101,954
Number of Sequences: 27780
Number of extensions: 340317
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)