Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30518.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 146 2e-35
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 146 2e-35
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 140 8e-34
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.97
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.3
At1g52460.1 68414.m05922 hypothetical protein 29 2.2
At1g52440.1 68414.m05920 hypothetical protein 28 5.2
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 28 6.8
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 9.0
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 9.0
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 146 bits (353), Expect = 2e-35
Identities = 63/110 (57%), Positives = 82/110 (74%)
Frame = +2
Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
L +G+ ++TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + F+VRGGMR+VEFKV+E
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIE 171
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/62 (62%), Positives = 52/62 (83%)
Frame = +3
Query: 72 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 251
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 252 RR 257
R+
Sbjct: 68 RK 69
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 146 bits (353), Expect = 2e-35
Identities = 63/110 (57%), Positives = 82/110 (74%)
Frame = +2
Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
L +G+ ++TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + F+VRGGMR+VEFKV+E
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIE 171
Score = 91.1 bits (216), Expect = 6e-19
Identities = 41/62 (66%), Positives = 53/62 (85%)
Frame = +3
Query: 72 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 251
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 252 RR 257
R+
Sbjct: 68 RK 69
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 140 bits (339), Expect = 8e-34
Identities = 58/110 (52%), Positives = 81/110 (73%)
Frame = +2
Query: 233 LAQGQTPQETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 412
L +G+ ++TVCI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 413 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDTPFMVRGGMRAVEFKVVE 562
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + F+VRGGMR++EFKV+E
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIE 172
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/63 (58%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +3
Query: 72 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 248
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 249 RRR 257
+R+
Sbjct: 68 KRK 70
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 224 TTEELKLLHFGL*KCHD*VVIAD 156
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 379 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 284
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At1g52460.1 68414.m05922 hypothetical protein
Length = 131
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 528 PRTMKGVSRWIGR*ASMKYGFKYTSNRLPVRPSTES 421
PR + G+S W+ + S+K ++ S P R +++S
Sbjct: 22 PRVVVGISGWLSKAKSLKRSIEFASYEAPPRAASQS 57
>At1g52440.1 68414.m05920 hypothetical protein
Length = 209
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 528 PRTMKGVSRWIGR*ASMKYGFKYTSNRLPVRPSTES 421
PR + G+S W+ S+K + S+ P R +++S
Sbjct: 96 PRVVVGISGWLSNSGSLKRSIESASHGAPARAASQS 131
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 355 IRKTHTKVVSHNTVHPNFLIRAIIV*EHDANGFLR 251
++K K+ H T +FLIR +V EH +GF R
Sbjct: 355 VKKNEVKIEVHETGERDFLIR--VVQEHKQDGFKR 387
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 67 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 210
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 46 SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 177
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,184
Number of Sequences: 28952
Number of extensions: 316272
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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