Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30517.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    32   0.50 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    32   0.50 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    32   0.50 
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    29   2.6  
U23182-3|AAK70642.1|  252|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    28   6.1  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    28   6.1  
U64848-1|AAB04881.2|  481|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    28   8.1  

>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 206  ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 69
            + +E RD+K  + D   R+  L+  L    T+ ++++ R  ++EK+
Sbjct: 1924 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 1969


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 206  ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 69
            + +E RD+K  + D   R+  L+  L    T+ ++++ R  ++EK+
Sbjct: 1997 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 2042


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 206  ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 69
            + +E RD+K  + D   R+  L+  L    T+ ++++ R  ++EK+
Sbjct: 1997 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 2042


>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -3

Query: 212 DFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIP 33
           D    E+R   +   ++E + K LEAA   +Q ++ KLQ      E ++++ + +++   
Sbjct: 251 DLFETEKRS--IIQSEREDQEKNLEAAKKASQREVEKLQQEKMAAENLAQESSEKLNVAK 308

Query: 32  ESRNEN 15
           E+ NE+
Sbjct: 309 ETTNES 314


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -3

Query: 197 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
           EQ + KL   D EK++K  +  L+K +  + +LQSR     K   ++  E  ++ E +N 
Sbjct: 267 EQDENKLRA-DLEKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNT 325

Query: 17  NVLDL 3
           +  +L
Sbjct: 326 HDFEL 330


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -3

Query: 197 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
           EQ + KL   D EK++K  +  L+K +  + +LQSR     K   ++  E  ++ E +N 
Sbjct: 267 EQDENKLRA-DLEKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNT 325

Query: 17  NVLDL 3
           +  +L
Sbjct: 326 HDFEL 330


>U23182-3|AAK70642.1|  252|Caenorhabditis elegans Hypothetical
           protein F40B5.3 protein.
          Length = 252

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 657 ISLSICMVRRFFKFSPDFNNSRSILARMFRKLKYEL 550
           ++ S+C    F++ +  F++ R+++A   + L YEL
Sbjct: 32  VNKSVCPCENFYRHACSFDSPRNLMATALKNLTYEL 67


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 166 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 279
           SSI+   S  + VM  +++KGL+ QV+  L  YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 166 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 279
           SSI+   S  + VM  +++KGL+ QV+  L  YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255


>U64848-1|AAB04881.2|  481|Caenorhabditis elegans Hypothetical
           protein C50E3.5 protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/82 (23%), Positives = 42/82 (51%)
 Frame = +1

Query: 70  IFSIVAVRLCSLERSV*VLRSAASRNLIRFSLSSIANLKSLCSAVMKSVVLKGLSYQVIK 249
           I S +++ + SL++S  +  S +  ++  F+  S    + L +  + SVV+   S+   K
Sbjct: 100 IKSALSILMRSLQKSSSMTTSLSDIDVTLFNFHSTKFAERLLNRNVSSVVIVESSHVFSK 159

Query: 250 SLKKYVLIFININFTTLNVFYL 315
           + KK+   F N++    +++ L
Sbjct: 160 NAKKFASEFSNVSAYRADIYTL 181


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/53 (20%), Positives = 30/53 (56%)
 Frame = -3

Query: 173 IEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNEN 15
           I D E +++  +     T    ++L++  ATI++++ ++ +++ E+    +EN
Sbjct: 518 ISDLENQLEAAKLESGSTSEPNAQLEASQATIQELTSEMKMQLEEVKRQSDEN 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,011,914
Number of Sequences: 27780
Number of extensions: 247604
Number of successful extensions: 666
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)