Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30517.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot... 31 0.81
At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase fa... 31 0.81
At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase fa... 31 0.81
At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase fa... 31 0.81
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote... 29 2.5
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote... 29 2.5
At1g58070.1 68414.m06581 expressed protein 29 3.3
At3g15600.1 68416.m01976 hypothetical protein low similarity to ... 29 4.3
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont... 28 5.7
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 28 5.7
At3g47400.1 68416.m05154 pectinesterase family protein similar t... 27 10.0
At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S... 27 10.0
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ... 27 10.0
>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
contains Pfam profile PF00439: Bromodomain
Length = 475
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = -3
Query: 170 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 60
E K+KR+ L+AALLK++ + L+S+ +++ S D
Sbjct: 75 ELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESND 111
>At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 431
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 636 PYRLIMICGVERYAWDHWLMHAKI 707
P ++++ G RYAW+H++ H KI
Sbjct: 367 PRSMLLLSGEARYAWNHYIPHHKI 390
>At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 344
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 636 PYRLIMICGVERYAWDHWLMHAKI 707
P ++++ G RYAW+H++ H KI
Sbjct: 280 PRSMLLLSGEARYAWNHYIPHHKI 303
>At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 431
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 636 PYRLIMICGVERYAWDHWLMHAKI 707
P ++++ G RYAW+H++ H KI
Sbjct: 367 PRSMLLLSGEARYAWNHYIPHHKI 390
>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: PF00069
Eukaryotic protein kinase domain, PF00560 leucine Rich
Repeat (5 copies)
Length = 640
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 457 FLYITLFLSRCIGSDNE*DKREL 525
FL +T F+SRC+ +D E DK+ L
Sbjct: 10 FLLVTTFVSRCLSADIESDKQAL 32
>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: PF00069
Eukaryotic protein kinase domain, PF00560 leucine Rich
Repeat (5 copies)
Length = 640
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 457 FLYITLFLSRCIGSDNE*DKREL 525
FL +T F+SRC+ +D E DK+ L
Sbjct: 10 FLLVTTFVSRCLSADIESDKQAL 32
>At1g58070.1 68414.m06581 expressed protein
Length = 284
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 152 IKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHE 39
+K LEA + +T+T++ L+ R + E LN E+H+
Sbjct: 133 LKKLEAEITETKTEVKMLKERESETEVALATLNAELHK 170
>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 591
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -3
Query: 191 RDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
+DF E+++KR+K LEAA+ Q S +++ A K D E+ E ++ E
Sbjct: 356 KDFSKKYEEQDKRLKLLEAAIKSIQ---SGIRTEDACGSKEIDDKENELEEGSDAETE 410
>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 736
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 179 LAIEDKEKRIKF----LEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 24
+++EDK R++ LE L K QT++ + + ++EK +DL I + E +
Sbjct: 458 ISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEK 513
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 179 LAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPE 30
+AIED+E R E A+ Q L +LQ + + +R+ +++I E E
Sbjct: 180 VAIEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKE 229
>At3g47400.1 68416.m05154 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Vitis vinifera
GI:15081598, Lycopersicon esculentum SP|Q43143
SP|P14280; contains Pfam profile PF01095 pectinesterase
Length = 594
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 119 QTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLDL 3
QT LS Q+ T S DLN+ +P N+N+ DL
Sbjct: 192 QTWLSTAQTNIETCRSGSEDLNVSDFVMPVISNKNLSDL 230
>At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|O23627 Glycyl-tRNA
synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
{Arabidopsis thaliana}; contains Pfam profile PF00587:
tRNA synthetase class II core domain (G, H, P, S and T)
Length = 276
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 163 KKSVLSFWKQHFL 125
K +VLSFW+QHF+
Sbjct: 33 KSNVLSFWRQHFI 45
>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
thaliana}
Length = 729
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 163 KKSVLSFWKQHFL 125
K +VLSFW+QHF+
Sbjct: 154 KSNVLSFWRQHFI 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,159
Number of Sequences: 28952
Number of extensions: 216849
Number of successful extensions: 545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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