Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30515.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    62   7e-11
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    27   3.4  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.4  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   3.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.0  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   6.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   6.0  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = -1

Query: 506 LFISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLAPT 327
           L I L  ++ +P++L  LI+GRD+ LV A   +RY SLP P+T  R+FD    T +L PT
Sbjct: 471 LTICLAVRETMPLTLASLIIGRDVLLVSAVSYLRYKSLPAPKTFRRFFDFAIPTTELKPT 530

Query: 326 FISKV 312
            ISKV
Sbjct: 531 RISKV 535



 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -2

Query: 649 FTTWALGLLVFAGITDLLEWLDS*KLEGQSTKMGSFLDPMADKVLV 512
           +T  A    ++AG TDL++   + K +  S   G+ LDP+ADK L+
Sbjct: 424 YTKAAACFFLYAGFTDLVDGYIARKFDLGSIA-GTVLDPLADKTLM 468


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 486 PSERDKESATRTLSAIGSKKE 548
           P E+D+++  R LS+IGS++E
Sbjct: 57  PIEQDRDAIIRILSSIGSRRE 77


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 306  SCSTSIGRHYAGVPSFWYVDHPALKVLCGITAASTIVSAVSY 181
            S   SI R +A +P    ++    ++LCG+ AAS   + + Y
Sbjct: 1240 SLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRY 1281


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -3

Query: 567 VNQQRWVLSWIQWQIKFS*HSL-YLSHLAGPHTYFIDTANSW 445
           ++Q RW   W  W + +S   L  +    G   Y +D   SW
Sbjct: 80  IDQSRWSKLWRIWNVGYSWFILSIIGTTVGFAAYMLDIVTSW 121


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 507 SLYLSHLAGPHTYFIDTANSWARYSIGCGWICHSIY 400
           S++ +H   P   +++ A SW +YS+  G +C  +Y
Sbjct: 35  SIFPTHYDQP---YLNEAPSWYKYSLESGLVCLYLY 67


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 403 YRMTNPATTNAISRPTISSVNEIGMRSCQVREIKRVLRELYLPLDPR 543
           +RM++ +  +       + + E+   S   + I R L+E+Y PLDP+
Sbjct: 279 FRMSSSSLRHTNINFLYNELRELLPTSISRKGIIRYLKEIYKPLDPK 325


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 307 VFTLLIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNPATTNAISRPTISS 459
           +F+LL K+G + +  CV        R G   I+++   ATT +I    I+S
Sbjct: 213 IFSLLSKIGPNLSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,742
Number of Sequences: 5004
Number of extensions: 60892
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)