Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30515.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    42   6e-04
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    36   0.041
07_03_0617 + 19992304-19992798,19992926-19993364,19993457-199936...    30   2.0  
01_06_1437 - 37358912-37359226                                         29   3.5  
07_03_0608 - 19924065-19924367,19924517-19924704,19924791-199252...    28   6.2  
07_03_0320 - 16748643-16748729,16748790-16748826,16749207-16749559     28   8.2  
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38...    28   8.2  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = -1

Query: 500 ISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRY--FDVTHATAQLAP 330
           I++  +DL+   L  L+V RD+ LV      R  SL     + S +   D  H   ++ P
Sbjct: 209 IAMVEKDLLHPGLVGLVVVRDLLLVGGAVYKRASSLGWKWNSWSDFVNLDAIHRE-KVKP 267

Query: 329 TFISKVNTAVQLLLVGTTLASPVFG 255
            FISKVNT  QL+LV   L  P FG
Sbjct: 268 LFISKVNTVFQLMLVAAALLQPEFG 292



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 18/42 (42%), Positives = 28/42 (66%)
 Frame = -2

Query: 637 ALGLLVFAGITDLLEWLDS*KLEGQSTKMGSFLDPMADKVLV 512
           A G L  +G +D L+   + K+ G ++  GS+LDP+ADKVL+
Sbjct: 164 AFGTLALSGASDWLDGFLARKM-GINSVFGSYLDPLADKVLI 204


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -2

Query: 643 TWALGLLVFAGITDLLEWLDS*KLEGQSTKMGSFLDPMADKVLVA 509
           T   G+ + A +TD L+   + K++   T  G+FLDP+ADK++VA
Sbjct: 165 TATTGIFLAAAVTDWLDGYIARKMQ-LGTPFGAFLDPVADKLMVA 208


>07_03_0617 +
           19992304-19992798,19992926-19993364,19993457-19993644,
           19993806-19994123
          Length = 479

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -1

Query: 497 SLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPP 387
           SLT +D++  ++ LL+ G + + V+  F++RY++  P
Sbjct: 267 SLTVEDIVDNAILLLLAGYETSSVLITFLLRYLANEP 303


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 392 PPPRTLSRYFDVTHATAQLAPTFI 321
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


>07_03_0608 -
           19924065-19924367,19924517-19924704,19924791-19925229,
           19925357-19925851
          Length = 474

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -1

Query: 497 SLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPP 387
           SLT +D++  ++ LLI G + + V+  F+IR ++  P
Sbjct: 267 SLTVEDIVDNAILLLIAGYETSSVLITFLIRQLANEP 303


>07_03_0320 - 16748643-16748729,16748790-16748826,16749207-16749559
          Length = 158

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 639 GHWGY*YSLELQIC*NGWIARNWKVN 562
           G WG   +++  +C   W A +W +N
Sbjct: 123 GRWGMGKNVDSMVCLTRWFAEDWMIN 148


>03_01_0046 -
           384444-384460,384649-384770,385144-385301,385379-385479,
           385748-385823,385983-386093,386165-386356,386729-387024,
           388299-388497
          Length = 423

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 476 IPISLTLLIVGRDIALVVAGFVIRYISLPPPR 381
           +P+S  LL  G   A V A F +  +S  PPR
Sbjct: 35  LPLSSPLLAAGAAAAAVTAAFSLSSLSFSPPR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,823,741
Number of Sequences: 37544
Number of extensions: 356343
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)