Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30515.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    49   3e-06
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    33   0.14 
At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,...    33   0.24 
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   1.7  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    30   1.7  
At5g17300.1 68418.m02026 myb family transcription factor similar...    28   6.8  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   6.8  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    27   9.0  

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
 Frame = -1

Query: 500 ISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRYFDVTHATAQ-LAPT 327
           +++  +DL+   L  +++ RD+ALV     +R ++L    +T S +F++  ++ Q + P 
Sbjct: 216 VAMVQKDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTWSDFFNLDGSSPQKVEPL 275

Query: 326 FISKVNTAVQLLLVGTTLASPVFG 255
           FISKVNT  QL LV   +  P FG
Sbjct: 276 FISKVNTVFQLTLVAGAILQPEFG 299



 Score = 31.1 bits (67), Expect = 0.73
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -2

Query: 634 LGLLVFAGITDLLEWLDS*KLEGQSTKMGSFLDPMADKVLV 512
           LGL V +G +D L+   + +++  S  +GS+LDP+ADKVL+
Sbjct: 173 LGLAV-SGASDWLDGYVARRMKINSV-VGSYLDPLADKVLI 211


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = -2

Query: 646 TTWALGLLVFAGITDLLEWLDS*KLEGQSTKMGSFLDPMADKVLVA 509
           TT    + + A ITD L+   + K+   S   G+FLDP+ADK++VA
Sbjct: 134 TTATTSIFIAAAITDWLDGYLARKMRLGSA-FGAFLDPVADKLMVA 178


>At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,
           putative similar to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana];
           contains non-consensus CG acceptor splice site at exon 4
          Length = 233

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 643 TWALGLLVFAGITDLLEWLDS*KLEGQSTKMGSFLDPMADKVLVA 509
           T    + + A ITD L+   + K+    ++ G+FLDP+ADK++VA
Sbjct: 71  TATTSIFIAAAITDWLDGYIARKMR-LGSEFGAFLDPVADKLMVA 114


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 4   LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 147
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 327 SRCKLCGCVCYIEIPTQRSRWW*AYISNDKSSHN 428
           S C +CG   +    T R+ WW A ++  +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247


>At5g17300.1 68418.m02026 myb family transcription factor similar to
           CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
           profile PF00249: Myb-like DNA-binding domain
          Length = 387

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 480 VLPSERDKESATRTLSAIGSK 542
           V PSERD +S T  LS +GS+
Sbjct: 148 VSPSERDTQSPTSVLSTVGSE 168


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 395 LPPPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 288
           L PP++LSR+ D+     Q+ P F   ++  V+ L+
Sbjct: 632 LYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 319 LIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNP 420
           +++V  S    CV + Y+ N+  GG+ ++++  P
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEP 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,732,079
Number of Sequences: 28952
Number of extensions: 298874
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)