Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30514.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    41   2e-04
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    37   0.002
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    36   0.004
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    36   0.004
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    28   1.5  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   2.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   6.0  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   7.9  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 85  KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 258
           K  + PKR MSA++ +    R K+K DNP     ++    G+ W+ +   ++  +EEKA+
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70

Query: 259 KPK 267
           + K
Sbjct: 71  QDK 73


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 97  KPKRPMSAYLLWLNSARSKIKDD--NPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAQK 261
           +PKRP SAY L+  + RS+IK+        V E+ K   E W S+   D+  +EE+A K
Sbjct: 116 QPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASK 174


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 91  TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 222
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 91  TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 222
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 320 REKKENPKTREESETGAKNKESETGRR 400
           ++KK  P  R+E  T  K K+   GRR
Sbjct: 598 KKKKSKPVNRDEDSTSGKKKQVTQGRR 624


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 302 KWRRSRREKKENPKTREESETGAKNKESETGR 397
           +W++  RE KE  K +EE E    ++ S TGR
Sbjct: 435 EWKKDERE-KEKRKRQEEEEENNLDRTSWTGR 465


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 248 SSHSLLSYMDLQISPAFLAISVTFNPGLS----SFIFDLALFNHNKYADI 111
           +SH   S +DL    A   + +TF P  S    + +FDL L  H  Y D+
Sbjct: 807 TSHPYKSALDLYDFMAHRVV-ITFEPRYSDDTNNGVFDLVLTTHTNYTDM 855


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 193 AKKAGEIWRSMYDKSEWEEKAQKPKNNT 276
           AKKA    +   D+SE EE A   KNNT
Sbjct: 178 AKKAQVKKKRTKDESEQEEAASPKKNNT 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,542
Number of Sequences: 5004
Number of extensions: 42600
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)