Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30514.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 48 9e-06
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 47 2e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 43 3e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 42 5e-04
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 42 5e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 40 0.003
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 39 0.004
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 38 0.010
04_01_0239 - 3126367-3127230,3127342-3128247 29 4.7
01_02_0078 - 10894871-10895841,10897268-10898426 29 4.7
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 8.2
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 258
K + PKR M+ ++ + + R +K++NP L TEIAKK GE+W+ M +K + +++Q
Sbjct: 594 KDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQ 653
Query: 259 KPK 267
K
Sbjct: 654 VDK 656
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 258
K + PKR ++ ++ + + R+ +K+ NP L TEIAKK GE W+ M +K + E++Q
Sbjct: 553 KDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQ 612
Query: 259 KPK 267
K
Sbjct: 613 VDK 615
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD 231
K +KPKRP SA+ +++ R K+ +P +K V+ I K G+ W+SM D
Sbjct: 30 KDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +1
Query: 97 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 267
K KRP +A+ L+++ R + K ++P K V+ +AK+ GE W+SM DK + +KA + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Frame = +1
Query: 97 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 267
KPKRP SA+ ++++ R + + +P K V ++K AGE WR+M +K+ + +KA + K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKK 91
Query: 268 NN 273
+
Sbjct: 92 QD 93
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 97 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDKSEWEEKAQKP 264
KPKR ++ + +L R + + +P K V + K AGE WR+M D+ + + +KP
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKP 80
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 225
+PK+P +A+ ++ R K++NP +K + E+ K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 103 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 267
K+P AY+LW ++IK ++P E++ G W+++ +K +EE+ ++ K
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEERYRQEK 214
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 258
K KPK+PMSAY ++ R+ + + V EI + GE W++M +K+ +E A+
Sbjct: 280 KDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFEAAAR 337
Query: 259 KPK 267
K +
Sbjct: 338 KQR 340
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKA 255
++PK+P S++LL+ AR ++ ++ PG+ + + W+ + +K W KA
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKA 467
>04_01_0239 - 3126367-3127230,3127342-3128247
Length = 589
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 305 WRRSRREKKENPKTREESETGAKNKESETGRR 400
W R+ K N + S KNK ETGRR
Sbjct: 156 WERAEAMKLANLENMRSSVKAEKNKRKETGRR 187
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
Frame = +2
Query: 299 CKWRRSRREKK-ENPKTR--EESETGAK 373
C+WRR+RRE++ N K R EE+++G++
Sbjct: 680 CRWRRNRREREGGNKKERGWEEADSGSQ 707
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 322 STGPPPFALNDSKSTMYCSLAFAPFLPIRFCHTWTSRFR 206
+T P PF+L+ S ST C+ P R WT + R
Sbjct: 42 ATRPSPFSLSPSISTPGCARCGDVGCPYRLDQPWTQKVR 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,909
Number of Sequences: 37544
Number of extensions: 228016
Number of successful extensions: 700
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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