Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30514.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    24   4.0  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   7.0  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   9.2  

>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 166 CHPLFLI*RCSTIINTLTLVFSVYLSF*ILKYVF 65
           CH + L   CS  I+TLTL       F ++ Y F
Sbjct: 168 CHTVPLAQGCSVYISTLTLTSIAIDRFFVIIYPF 201


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 169 PGLKVTEIAKKAGEIWRSMYDK 234
           P   + E++   GE W  +YDK
Sbjct: 340 PRPDIIEVSPSEGETWDGIYDK 361


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 539 GFCYLDLNNTLFCS 580
           GFC  ++N   FCS
Sbjct: 71  GFCIAEVNGVFFCS 84


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,085
Number of Sequences: 2352
Number of extensions: 9915
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)