Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30514.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 50 1e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 49 3e-06
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 48 5e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 48 5e-06
At3g28730.1 68416.m03587 structure-specific recognition protein ... 48 8e-06
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 47 1e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 1e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 41 7e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 7e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 40 0.002
At1g65090.1 68414.m07379 expressed protein 33 0.14
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 33 0.18
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 30 1.3
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 30 1.7
At5g08240.1 68418.m00967 expressed protein 29 2.2
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 3.0
At4g13540.1 68417.m02111 expressed protein 28 6.8
At2g31010.1 68415.m03781 protein kinase family protein contains ... 27 9.0
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 27 9.0
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = +1
Query: 97 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAQKPK 267
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ + K+ +++ A+K K
Sbjct: 245 KPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNK 301
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 103 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAQKPK 267
KRP + Y+LW +++K NP E + G W+ S +K +EEK Q K
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
Score = 34.7 bits (76), Expect = 0.060
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +1
Query: 94 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 240
+KPK+P S+Y L+ AR + +++PG+ + + W + ++ +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +1
Query: 97 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE--WEEKAQKPKN 270
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK + +E+ A+K K
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKE 311
Query: 271 NTL 279
L
Sbjct: 312 TYL 314
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 103 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 267
KRP S+Y+LW +++K +NP E + G W+S+ DK +EE+ Q K
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEK 195
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 94 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAQK 261
+KPK+P S+Y L+ R K+ ++ PG + W+ S +K + KA K
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAK 434
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 255
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +EEKA
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 256 QKPK 267
K K
Sbjct: 108 AKRK 111
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 255
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +EEKA
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 256 QKPK 267
K K
Sbjct: 108 AKRK 111
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAQ 258
K + PKR MS ++ + R IK ++PG+ E+ K G+ WR M DK +E KAQ
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616
Query: 259 KPK 267
K
Sbjct: 617 VDK 619
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWEEKA 255
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D K+ + KA
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 256 QKPK 267
+K K
Sbjct: 93 EKRK 96
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWEEKA 255
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D K+ + KA
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 256 QKPK 267
K K
Sbjct: 90 DKRK 93
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +1
Query: 91 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 240
++KPKRP++A+ ++++ R K ++ G + AK GE W+S+ ++ +
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEK 161
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 TDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 225
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 255
K ++PKRP SA+ ++L R + NP K V + K AG W++M DK+ + KA
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
Query: 256 QKPK 267
+ K
Sbjct: 90 ESRK 93
>At1g65090.1 68414.m07379 expressed protein
Length = 284
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 323 EKKENPKTREESETGAKNKESETGR 397
EK+E P+TR E ETGA E+ TG+
Sbjct: 178 EKREAPETRREGETGATKIETSTGK 202
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 85 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 255
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M +++ + K+
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKS 88
Query: 256 QKPK 267
Q K
Sbjct: 89 QSKK 92
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +1
Query: 118 AYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIW----RSMYDKSEWEEKAQKPKNNTL 279
A L WL+ + KD PG K+ +A E W R+ + + ++EE + N +
Sbjct: 451 AVLAWLSILAHRNKDTKPGDKLVSVADVVKEYWATYGRNFFSRYDYEECESEGANKMI 508
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 302 KWRRSRREKKENPKTREESETGAKNKESET 391
KWR +K++N + +S G+K KE+ET
Sbjct: 712 KWREVSEKKRKNGSSHGKSIQGSKEKEAET 741
>At5g08240.1 68418.m00967 expressed protein
Length = 258
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 212 SGGPCMTKANG--KKRRKSQRT----IHCRFRII*CKWRRSRREKKENPKTREESETGAK 373
S P +TK +G KK+ K +R + +FR+ + + S E+ E P +R E ET K
Sbjct: 30 SDKPMVTKGDGGEKKKMKKKRIPRWFLCSKFRLKNSEIKPSPIEETEKPTSRVEDETDDK 89
Query: 374 NKESETGRR 400
K RR
Sbjct: 90 QKPLSVIRR 98
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +2
Query: 194 PKKQAKSGGPCMTKANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTREESETGAK 373
PKK A SG + ++ IH +F + + + RR+ + P +++E++
Sbjct: 272 PKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVV 331
Query: 374 NKE 382
+E
Sbjct: 332 RRE 334
>At4g13540.1 68417.m02111 expressed protein
Length = 210
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 233 KANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTREE-SETGAKNKESETGR 397
KAN ++RR+++R + + R+I +KE + REE K +E E G+
Sbjct: 20 KANEQRRRETRRELDEKERVILALKMAETEWRKERKRLREEVKRLRQKMEEKEEGK 75
>At2g31010.1 68415.m03781 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 775
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 194 PKKQAKSGGPCMTKANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTREESETGAK 373
P S M + + RK T H + WRRSRR K E T +
Sbjct: 307 PNASGSSLRSLMLRPSTAIERKLSNTSHSEPNVATVFWRRSRR------KVIAEQRTASS 360
Query: 374 NKESETGRRGR 406
+ E + RRGR
Sbjct: 361 SPEHPSMRRGR 371
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 200 KQAKSGGPCMTKANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTREES 358
+ + GG TK KR C I C +R +RE++ + +EES
Sbjct: 327 ENTEDGGKASTKQKSHKRHGRHHKSDCMCAI--CVLKRRKRERERDSGAQEES 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,250
Number of Sequences: 28952
Number of extensions: 204115
Number of successful extensions: 667
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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