Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30512.Seq
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    73   2e-14
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   4.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   9.6  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 33/50 (66%), Positives = 40/50 (80%)
 Frame = +1

Query: 103 VTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
           VTR+YT+++HKRL+G  FKKRAPRAIKEI  FA K M T ++RVD  LNK
Sbjct: 13  VTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNK 62


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 430 GVYSWLASTFSVCKPLID 377
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 457 FPDVFLYTKGVYSWLASTFSVCKPLID 377
           +P  F Y + V SW+A  F   K ++D
Sbjct: 60  YPPFFAYMECVLSWIAYFFGFDKAMLD 86


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 375 QQARKSLV*ITYVRNLHHHYVFVKASH 295
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,770
Number of Sequences: 5004
Number of extensions: 27697
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)