Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30512.Seq
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 84 4e-17
08_02_1181 - 24985963-24986242,24987109-24987197 83 1e-16
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 69 2e-12
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019... 29 1.8
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 27 5.4
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 27 9.5
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 27 9.5
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 84.2 bits (199), Expect = 4e-17
Identities = 38/50 (76%), Positives = 42/50 (84%)
Frame = +1
Query: 103 VTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
VTREYT+NLHKRLHG FKK+AP AIKEIR FA K MGT D+RVD +LNK
Sbjct: 17 VTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNK 66
Score = 34.3 bits (75), Expect = 0.047
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 159 KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILWSKGXXXXXXXXXXXXXXXXNDDEDSA 338
K P + + K K G L + +WS G ND+ED+
Sbjct: 36 KKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDEEDAK 95
Query: 339 HKLFTLVTY--VPVASIKGLQTENVD 410
+L++LVT VP +KGL T+ V+
Sbjct: 96 EELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 82.6 bits (195), Expect = 1e-16
Identities = 37/50 (74%), Positives = 41/50 (82%)
Frame = +1
Query: 103 VTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
VTREYT+NLHKRLH FKK+AP AIKEIR FA K MGT D+RVD +LNK
Sbjct: 15 VTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNK 64
Score = 37.1 bits (82), Expect = 0.007
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 159 KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILWSKGXXXXXXXXXXXXXXXXNDDEDSA 338
K P + + K K G + L + +WS G ND+ED+
Sbjct: 34 KKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAK 93
Query: 339 HKLFTLVTY--VPVASIKGLQTENVD 410
+L++LVT VP +KGL T+ VD
Sbjct: 94 EELYSLVTVAEVPPEGLKGLGTKVVD 119
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 68.5 bits (160), Expect = 2e-12
Identities = 38/66 (57%), Positives = 42/66 (63%), Gaps = 16/66 (24%)
Frame = +1
Query: 103 VTREYTVNLHKRLHGX----------------GFKKRAPRAIKEIRXFAXKQMGTPDIRV 234
VTREYT+NLHKRLHG FKK+AP AIKEIR FA K MGT DIR+
Sbjct: 16 VTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTDIRI 75
Query: 235 DTRLNK 252
D +LNK
Sbjct: 76 DVKLNK 81
Score = 35.5 bits (78), Expect = 0.020
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 159 KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILWSKGXXXXXXXXXXXXXXXXNDDEDSA 338
K P + + K K G + L + +W+ G ND+ED+
Sbjct: 51 KKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAK 110
Query: 339 HKLFTLVTY--VPVASIKGLQTENVD 410
+L++LVT +P +KGL T+ V+
Sbjct: 111 EELYSLVTVAEIPAEGLKGLGTKVVE 136
>05_03_0418 +
13700855-13700942,13701602-13701728,13701845-13701916,
13702079-13702153,13702290-13702361,13702477-13702638,
13702726-13702800,13702880-13702951,13703040-13703108,
13703196-13703264,13703355-13703429,13703522-13703593,
13703668-13703737,13703920-13704361,13704442-13704573,
13704664-13704803,13704910-13705129,13705301-13705536,
13705732-13706256
Length = 930
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 86 SAINXLLPVNIQLIYTND--FMXLDLKSVPQEQSKKSEXSLXNRWEL 220
S +N P N+ L+Y+ND ++ +D+++ P Q + + + N + L
Sbjct: 441 SKLNSCTPNNLGLVYSNDDAYLNVDIRACPVNQKRFNYSQVLNCFNL 487
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 271 TPLDQRICLSECLLECPEFPSV 206
T D I EC ++CPEFP +
Sbjct: 755 TSSDAEIIFMECGIDCPEFPEL 776
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 274 LTPLDQRICLSECLLECPEFPSV 206
L +D RI ECLL+ P FPS+
Sbjct: 926 LALVDLRIKNCECLLDLPSFPSL 948
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 53 MAKPKGERKGKSAINXLLPVNIQLIYTNDFMXLDLKSVPQEQS 181
+ K KG + LL +N+Q+ Y N+ + +L + QE++
Sbjct: 398 LPKLKGSPLAAKTLGRLLRMNLQIPYWNNILLSELWDLKQEET 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,150,543
Number of Sequences: 37544
Number of extensions: 163091
Number of successful extensions: 298
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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